miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31657 5' -57.2 NC_006883.1 + 231981 0.66 0.93982
Target:  5'- gUCCAgUUGGAguuggaaCAGGAuuuGGACCUGg- -3'
miRNA:   3'- gAGGUgAACCUg------GUCCU---CCUGGACgu -5'
31657 5' -57.2 NC_006883.1 + 155761 0.66 0.93982
Target:  5'- uUCC-CUUGGA---GGAGGACaCUGCu -3'
miRNA:   3'- gAGGuGAACCUgguCCUCCUG-GACGu -5'
31657 5' -57.2 NC_006883.1 + 23215 0.66 0.919846
Target:  5'- -------aGGACCAGGAGGACCa--- -3'
miRNA:   3'- gaggugaaCCUGGUCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 23374 0.66 0.914295
Target:  5'- -aCCAgUUGGACCuGGAuuugaaGGACCUaCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCU------CCUGGAcGU- -5'
31657 5' -57.2 NC_006883.1 + 222954 0.67 0.909109
Target:  5'- uUCCACcagcaggaccagcaGGACCAGGAgaaccaguaGGACCaGCAg -3'
miRNA:   3'- gAGGUGaa------------CCUGGUCCU---------CCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 21833 0.67 0.902529
Target:  5'- -aCCACUcGGACCAacaucaccuuGAGGGCCaGCAg -3'
miRNA:   3'- gaGGUGAaCCUGGUc---------CUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 223031 0.67 0.889891
Target:  5'- -aCCAgUaGGACCAGGAuuuccaacaGGACCaguUGCAc -3'
miRNA:   3'- gaGGUgAaCCUGGUCCU---------CCUGG---ACGU- -5'
31657 5' -57.2 NC_006883.1 + 21925 0.67 0.883254
Target:  5'- -aCCugUUGGACCAGcaucaccuuGcGGACCUuGCGg -3'
miRNA:   3'- gaGGugAACCUGGUC---------CuCCUGGA-CGU- -5'
31657 5' -57.2 NC_006883.1 + 222790 0.68 0.869357
Target:  5'- gUCCugUUGGuccuCCAGGuccuccuGGuCCUGCu -3'
miRNA:   3'- gAGGugAACCu---GGUCCu------CCuGGACGu -5'
31657 5' -57.2 NC_006883.1 + 26776 0.68 0.869357
Target:  5'- -aCCAgUUGGACCuGcAGGACCaguUGCAc -3'
miRNA:   3'- gaGGUgAACCUGGuCcUCCUGG---ACGU- -5'
31657 5' -57.2 NC_006883.1 + 28242 0.68 0.862109
Target:  5'- uCUCCACcaguaGGACCAGcAGGACCaGUc -3'
miRNA:   3'- -GAGGUGaa---CCUGGUCcUCCUGGaCGu -5'
31657 5' -57.2 NC_006883.1 + 21880 0.68 0.847035
Target:  5'- -aCCACcagcaGGACCA-GAGGACCaGCAg -3'
miRNA:   3'- gaGGUGaa---CCUGGUcCUCCUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 26636 0.69 0.823074
Target:  5'- uUCCACcugugGGACCAGcAGGACCaguuggaccuguUGCAc -3'
miRNA:   3'- gAGGUGaa---CCUGGUCcUCCUGG------------ACGU- -5'
31657 5' -57.2 NC_006883.1 + 23140 0.69 0.797656
Target:  5'- -aCCAgUUGGACCuGGAGcACCUGgAu -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCcUGGACgU- -5'
31657 5' -57.2 NC_006883.1 + 23341 0.69 0.788894
Target:  5'- -aCCAgUUGGACCuGGAGaACCaGCAg -3'
miRNA:   3'- gaGGUgAACCUGGuCCUCcUGGaCGU- -5'
31657 5' -57.2 NC_006883.1 + 28525 0.7 0.779999
Target:  5'- -aCCugUUGGACCAGuuGGACCaGUc -3'
miRNA:   3'- gaGGugAACCUGGUCcuCCUGGaCGu -5'
31657 5' -57.2 NC_006883.1 + 27526 0.7 0.761847
Target:  5'- uCUCCACcuguaGGACCugauGGAccuguaGGACCUGCu -3'
miRNA:   3'- -GAGGUGaa---CCUGGu---CCU------CCUGGACGu -5'
31657 5' -57.2 NC_006883.1 + 28562 0.7 0.761847
Target:  5'- uUCCuggUGGACCuGGAGGACCa--- -3'
miRNA:   3'- gAGGugaACCUGGuCCUCCUGGacgu -5'
31657 5' -57.2 NC_006883.1 + 184514 0.7 0.752605
Target:  5'- aUCaugguCUUGaACCAGGAGGACCUGa- -3'
miRNA:   3'- gAGgu---GAACcUGGUCCUCCUGGACgu -5'
31657 5' -57.2 NC_006883.1 + 27719 0.7 0.752605
Target:  5'- -aCCugUcGGACCAGuAGGACCUGa- -3'
miRNA:   3'- gaGGugAaCCUGGUCcUCCUGGACgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.