miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31658 3' -57.8 NC_006883.1 + 28152 0.66 0.943494
Target:  5'- gUUCCACCugaaGGACCaguUGGAccaguuGGACCu -3'
miRNA:   3'- aGAGGUGGugagCCUGG---ACCU------CCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22133 0.66 0.924677
Target:  5'- ----aACCACUUGGACCaGcAGGACCn -3'
miRNA:   3'- agaggUGGUGAGCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22244 0.66 0.924677
Target:  5'- -aUCCAgCA---GGACCaGGAGGACCn -3'
miRNA:   3'- agAGGUgGUgagCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21608 0.67 0.913984
Target:  5'- uUCUCCAUgAauaGGACuaaCUGGAGGAUUa -3'
miRNA:   3'- -AGAGGUGgUgagCCUG---GACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23195 0.67 0.890059
Target:  5'- ----gACCACUUGGACCaucAGGACCa -3'
miRNA:   3'- agaggUGGUGAGCCUGGaccUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 165920 0.69 0.840535
Target:  5'- uUCUUaucCCACUUaGaACCUGGAGGACa -3'
miRNA:   3'- -AGAGgu-GGUGAGcC-UGGACCUCCUGg -5'
31658 3' -57.8 NC_006883.1 + 222955 0.69 0.824775
Target:  5'- gUUCCACCAgcaGGACCaGcAGGACCa -3'
miRNA:   3'- aGAGGUGGUgagCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 27729 0.69 0.808387
Target:  5'- -gUCCugugggACCugUCGGACCaGuAGGACCu -3'
miRNA:   3'- agAGG------UGGugAGCCUGGaCcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 21950 0.69 0.799973
Target:  5'- -aUCCaguaccaggaggACCAgUUGGACCUGuuGGACCa -3'
miRNA:   3'- agAGG------------UGGUgAGCCUGGACcuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23306 0.7 0.791425
Target:  5'- ----gACCAgUUGGACCaccgauaccUGGAGGACCu -3'
miRNA:   3'- agaggUGGUgAGCCUGG---------ACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23141 0.7 0.782747
Target:  5'- ----gACCAgUUGGACCUGGAGcACCu -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 23926 0.7 0.782747
Target:  5'- ----gACCAgUUGGACCUGuAGGACCu -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23223 0.7 0.756016
Target:  5'- ---nCACCAgcaGGACCaGGAGGACCa -3'
miRNA:   3'- agagGUGGUgagCCUGGaCCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 22049 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGuAGGACCg -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23342 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGGAGaACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACCUCcUGG- -5'
31658 3' -57.8 NC_006883.1 + 26777 0.71 0.737693
Target:  5'- ----gACCAgUUGGACCUGcAGGACCa -3'
miRNA:   3'- agaggUGGUgAGCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 23402 0.71 0.690577
Target:  5'- -gUCCaguuggACCugUgGGACCUGuGGGACCa -3'
miRNA:   3'- agAGG------UGGugAgCCUGGACcUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28539 0.73 0.622982
Target:  5'- cUUCCACCugaaGGACCUGuuGGACCa -3'
miRNA:   3'- aGAGGUGGugagCCUGGACcuCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28563 0.73 0.593967
Target:  5'- gUUCCugg---UGGACCUGGAGGACCa -3'
miRNA:   3'- aGAGGuggugaGCCUGGACCUCCUGG- -5'
31658 3' -57.8 NC_006883.1 + 28494 0.74 0.565176
Target:  5'- gUUCCACC---UGGACCaGGAGGACCn -3'
miRNA:   3'- aGAGGUGGugaGCCUGGaCCUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.