miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 3' -59.6 NC_006883.1 + 208989 0.66 0.870834
Target:  5'- -cGGuAGGGauuaCAGCAGGuucACUGGGACUAa -3'
miRNA:   3'- gaCC-UCCUg---GUCGUCC---UGGUCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28513 0.66 0.863748
Target:  5'- -aGuuGGACCAGUcGGACCAGuuCCAc -3'
miRNA:   3'- gaCcuCCUGGUCGuCCUGGUCcuGGU- -5'
31659 3' -59.6 NC_006883.1 + 22607 0.66 0.849016
Target:  5'- uCUGGuacaacuGGAUCuGguGGAUCAGGugUAa -3'
miRNA:   3'- -GACCu------CCUGGuCguCCUGGUCCugGU- -5'
31659 3' -59.6 NC_006883.1 + 223080 0.66 0.84138
Target:  5'- ------cACCAGCAGGACCAGGAg-- -3'
miRNA:   3'- gaccuccUGGUCGUCCUGGUCCUggu -5'
31659 3' -59.6 NC_006883.1 + 27219 0.67 0.8256
Target:  5'- cCUGGuccuacAGGuCCAGCAGGuccuaCAGGuCCAu -3'
miRNA:   3'- -GACC------UCCuGGUCGUCCug---GUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 210951 0.67 0.815823
Target:  5'- uCUGGAuGACCAGaaucuacaaguGGACCAGuuGGCCAa -3'
miRNA:   3'- -GACCUcCUGGUCgu---------CCUGGUC--CUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23441 0.68 0.765737
Target:  5'- uCUGGu---CCAGCAGGuccuCCAGGuCCAg -3'
miRNA:   3'- -GACCuccuGGUCGUCCu---GGUCCuGGU- -5'
31659 3' -59.6 NC_006883.1 + 24961 0.69 0.710151
Target:  5'- aUGGAccacuuGGACCuGUAGGACCuggAGGAgCAa -3'
miRNA:   3'- gACCU------CCUGGuCGUCCUGG---UCCUgGU- -5'
31659 3' -59.6 NC_006883.1 + 26978 0.69 0.69106
Target:  5'- cCUGGAGaACCAGCAGGACCuuGuGAaacugauacCCAc -3'
miRNA:   3'- -GACCUCcUGGUCGUCCUGGu-C-CU---------GGU- -5'
31659 3' -59.6 NC_006883.1 + 27304 0.69 0.681443
Target:  5'- gUGGcacAGGuCCAGCAGGuccuCCAGGuCCu -3'
miRNA:   3'- gACC---UCCuGGUCGUCCu---GGUCCuGGu -5'
31659 3' -59.6 NC_006883.1 + 27372 0.7 0.642686
Target:  5'- aCUGGuacuccAGGuCCAGCAGGuccuCCAGGuCCu -3'
miRNA:   3'- -GACC------UCCuGGUCGUCCu---GGUCCuGGu -5'
31659 3' -59.6 NC_006883.1 + 28410 0.7 0.613514
Target:  5'- cCUGGAGGACCuGgAGGACCAcuuCCc -3'
miRNA:   3'- -GACCUCCUGGuCgUCCUGGUccuGGu -5'
31659 3' -59.6 NC_006883.1 + 28178 0.71 0.555672
Target:  5'- ---cAGcACCAGCAGGACCAguuGGACCAg -3'
miRNA:   3'- gaccUCcUGGUCGUCCUGGU---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 222992 0.72 0.527317
Target:  5'- -aGGcGaACCAGCAGGACCAGGugaACCu -3'
miRNA:   3'- gaCCuCcUGGUCGUCCUGGUCC---UGGu -5'
31659 3' -59.6 NC_006883.1 + 23929 0.73 0.472391
Target:  5'- uUGGAccaguuGGACCuGUAGGACCugcuGGACCu -3'
miRNA:   3'- gACCU------CCUGGuCGUCCUGGu---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 27745 0.73 0.454725
Target:  5'- cCUGuGGGACCAGUugguccuguGGGACCugucGGACCAg -3'
miRNA:   3'- -GACcUCCUGGUCG---------UCCUGGu---CCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 23382 0.74 0.423857
Target:  5'- cCUGuGGGACCAGUuggaccuggauuugaAGGACCuacAGGACCAg -3'
miRNA:   3'- -GACcUCCUGGUCG---------------UCCUGG---UCCUGGU- -5'
31659 3' -59.6 NC_006883.1 + 28146 0.75 0.387887
Target:  5'- cCUGaAGGACCAGUuGGACCAguuGGACCu -3'
miRNA:   3'- -GACcUCCUGGUCGuCCUGGU---CCUGGu -5'
31659 3' -59.6 NC_006883.1 + 22095 0.75 0.379996
Target:  5'- cCUGGAGGACCAcUuGGACCAGGAg-- -3'
miRNA:   3'- -GACCUCCUGGUcGuCCUGGUCCUggu -5'
31659 3' -59.6 NC_006883.1 + 26710 0.75 0.36454
Target:  5'- -aGGAGGACCuGCuGGACCuGGAguaCCAg -3'
miRNA:   3'- gaCCUCCUGGuCGuCCUGGuCCU---GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.