miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31659 5' -56.6 NC_006883.1 + 212118 0.66 0.964728
Target:  5'- uUCUGGuGGAUauggaUACUuaaguagAGGACCUGGa -3'
miRNA:   3'- -GGACCuCCUGgug--GUGA-------UCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 213907 0.67 0.942784
Target:  5'- aCUGGuaAGGACCACCAUugUAGaGCCa-- -3'
miRNA:   3'- gGACC--UCCUGGUGGUG--AUCcUGGacc -5'
31659 5' -56.6 NC_006883.1 + 21800 0.67 0.938343
Target:  5'- --aGGAccaGGACCGCCACcuGGACCa-- -3'
miRNA:   3'- ggaCCU---CCUGGUGGUGauCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 112315 0.68 0.906576
Target:  5'- aCUGGuGGAUCuggugguGCUACUGguGGAUCUGGu -3'
miRNA:   3'- gGACCuCCUGG-------UGGUGAU--CCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 211620 0.69 0.888685
Target:  5'- uCCUGGugcuacucuAGGACCACCACUccaaGAuCCUGc -3'
miRNA:   3'- -GGACC---------UCCUGGUGGUGAuc--CU-GGACc -5'
31659 5' -56.6 NC_006883.1 + 21943 0.69 0.882112
Target:  5'- aCCaGGAGGACCAgUu---GGACCUGu -3'
miRNA:   3'- -GGaCCUCCUGGUgGugauCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 26656 0.69 0.882112
Target:  5'- gUCUGGAccaguuGGACCaguuccACCugUGGGACCa-- -3'
miRNA:   3'- -GGACCU------CCUGG------UGGugAUCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 28147 0.69 0.878072
Target:  5'- aCCUGaAGGACCaguuggaccaguuggACCugUAGGuCCUGu -3'
miRNA:   3'- -GGACcUCCUGG---------------UGGugAUCCuGGACc -5'
31659 5' -56.6 NC_006883.1 + 26988 0.69 0.868368
Target:  5'- aCCaGGAGGACCuggagaACCAgcAGGACCUu- -3'
miRNA:   3'- -GGaCCUCCUGG------UGGUgaUCCUGGAcc -5'
31659 5' -56.6 NC_006883.1 + 23916 0.69 0.868368
Target:  5'- aCCUGuAGGACCugCu---GGACCUGu -3'
miRNA:   3'- -GGACcUCCUGGugGugauCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 15375 0.69 0.861205
Target:  5'- aCUUGGAaaauguuauaguGGACCuCCAUUAGGAUgugCUGGu -3'
miRNA:   3'- -GGACCU------------CCUGGuGGUGAUCCUG---GACC- -5'
31659 5' -56.6 NC_006883.1 + 23203 0.71 0.780273
Target:  5'- aCCaGGAGGACCacuuggACCAUcAGGACCa-- -3'
miRNA:   3'- -GGaCCUCCUGG------UGGUGaUCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 22065 0.72 0.753318
Target:  5'- ---nGAGGACCACCAgcAGGACCaguUGGa -3'
miRNA:   3'- ggacCUCCUGGUGGUgaUCCUGG---ACC- -5'
31659 5' -56.6 NC_006883.1 + 21999 0.72 0.753318
Target:  5'- gUUGGAccaGGACCuCCACUuGGACCaGGa -3'
miRNA:   3'- gGACCU---CCUGGuGGUGAuCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 21845 0.73 0.677762
Target:  5'- --aGGAccaGGACCACCACUcGGACCa-- -3'
miRNA:   3'- ggaCCU---CCUGGUGGUGAuCCUGGacc -5'
31659 5' -56.6 NC_006883.1 + 26794 0.73 0.658379
Target:  5'- aCCUGGuGGACCagcaggACCAgUuGGACCUGc -3'
miRNA:   3'- -GGACCuCCUGG------UGGUgAuCCUGGACc -5'
31659 5' -56.6 NC_006883.1 + 23287 0.74 0.629179
Target:  5'- aCCUGGAGGACCuug---AGGACCaGGa -3'
miRNA:   3'- -GGACCUCCUGGuggugaUCCUGGaCC- -5'
31659 5' -56.6 NC_006883.1 + 23158 0.75 0.590303
Target:  5'- aCCUGGAGcACCagcaggACCAgUuGGACCUGGa -3'
miRNA:   3'- -GGACCUCcUGG------UGGUgAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 23365 0.75 0.561413
Target:  5'- aCCUGGAuuugaaGGACCuacaggACCAgUuGGACCUGGa -3'
miRNA:   3'- -GGACCU------CCUGG------UGGUgAuCCUGGACC- -5'
31659 5' -56.6 NC_006883.1 + 23419 0.76 0.517938
Target:  5'- aCCUGuAGGACCaucugguccaguuggACCugUGGGACCUGu -3'
miRNA:   3'- -GGACcUCCUGG---------------UGGugAUCCUGGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.