miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31660 5' -50.5 NC_006883.1 + 21748 0.66 0.999148
Target:  5'- cUGGuccUGcuGGuCCUACGGGuCCAGa -3'
miRNA:   3'- -ACCuaaACuuCCuGGAUGUCCuGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22138 0.66 0.998964
Target:  5'- nGG---UGAAccacuuGGACCaGCAGGACCAu -3'
miRNA:   3'- aCCuaaACUU------CCUGGaUGUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 203460 0.66 0.998747
Target:  5'- gGGAUaUUGAaucuugggAGGAUCa--AGGACCAGa -3'
miRNA:   3'- aCCUA-AACU--------UCCUGGaugUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23156 0.67 0.998194
Target:  5'- -----cUGGAGcACCaGCAGGACCAGu -3'
miRNA:   3'- accuaaACUUCcUGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 211372 0.67 0.998194
Target:  5'- aGGAgguaauaAAGGACCU-CAuccuGGACCAGg -3'
miRNA:   3'- aCCUaaac---UUCCUGGAuGU----CCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 19055 0.67 0.997849
Target:  5'- aGGAcUUUGAuaucuuccucuAGGACCUucguuggaAGGACCAa -3'
miRNA:   3'- aCCU-AAACU-----------UCCUGGAug------UCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 223007 0.67 0.996991
Target:  5'- aGGAccagUUGcaccAGGcgaACCaGCAGGACCAGg -3'
miRNA:   3'- aCCUa---AACu---UCC---UGGaUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 28160 0.67 0.996991
Target:  5'- uUGGAccagUUccaccUGAAGGACCaGuuGGACCAGn -3'
miRNA:   3'- -ACCU----AA-----ACUUCCUGGaUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 22237 0.67 0.996466
Target:  5'- aGGAccaGGAGGACC-ACuuGGACCAu -3'
miRNA:   3'- aCCUaaaCUUCCUGGaUGu-CCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 23145 0.68 0.995867
Target:  5'- cUGGAccaGAuGGuCCUACAGGuccACCAGg -3'
miRNA:   3'- -ACCUaaaCUuCCuGGAUGUCC---UGGUC- -5'
31660 5' -50.5 NC_006883.1 + 26982 0.68 0.995188
Target:  5'- aGGAccUGGAGaACCaGCAGGACCu- -3'
miRNA:   3'- aCCUaaACUUCcUGGaUGUCCUGGuc -5'
31660 5' -50.5 NC_006883.1 + 248294 0.68 0.995188
Target:  5'- aGGAUgUGcuGGACUgagaucauUAGGACCAGa -3'
miRNA:   3'- aCCUAaACuuCCUGGau------GUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 27732 0.69 0.990313
Target:  5'- uUGGuccUGuGGGACCUGucGGACCAGu -3'
miRNA:   3'- -ACCuaaACuUCCUGGAUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 24952 0.69 0.987519
Target:  5'- uUGGAccUGuAGGACCUGgAGGAgCAa -3'
miRNA:   3'- -ACCUaaACuUCCUGGAUgUCCUgGUc -5'
31660 5' -50.5 NC_006883.1 + 21940 0.7 0.98221
Target:  5'- aGGAg--GAccaguuGGACCUGuuGGACCAGc -3'
miRNA:   3'- aCCUaaaCUu-----CCUGGAUguCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 27847 0.7 0.975358
Target:  5'- cUGGuccuacAGGACCUACAGGuCCAa -3'
miRNA:   3'- -ACCuaaacuUCCUGGAUGUCCuGGUc -5'
31660 5' -50.5 NC_006883.1 + 28124 0.71 0.972695
Target:  5'- uUGGAccUGuAGGuCCUGUAGGACCAGn -3'
miRNA:   3'- -ACCUaaACuUCCuGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 27552 0.71 0.96983
Target:  5'- cUGGAccaccuGGACCUGgAGGACCAu -3'
miRNA:   3'- -ACCUaaacuuCCUGGAUgUCCUGGUc -5'
31660 5' -50.5 NC_006883.1 + 27758 0.71 0.963467
Target:  5'- aGGAccaGuuGGACCUGUGGGACCAGu -3'
miRNA:   3'- aCCUaaaCuuCCUGGAUGUCCUGGUC- -5'
31660 5' -50.5 NC_006883.1 + 23206 0.71 0.962783
Target:  5'- aGGAccaGGAGGACCacuuggaccauCAGGACCAGc -3'
miRNA:   3'- aCCUaaaCUUCCUGGau---------GUCCUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.