Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31661 | 3' | -57.8 | NC_006883.1 | + | 12666 | 0.68 | 0.848379 |
Target: 5'- cCACCGCCACCAGAagauuuagauugaccUCCuuGuGGAgCUg -3' miRNA: 3'- -GUGGUGGUGGUCU---------------AGGucCuCCUgGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 14274 | 0.66 | 0.923561 |
Target: 5'- cCugCACCACCAGAUCCugcGGuu-GCUg -3' miRNA: 3'- -GugGUGGUGGUCUAGGu--CCuccUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 21790 | 0.78 | 0.341896 |
Target: 5'- cCGCCACCuggACCAGAaggaCCuGGAGGACCa -3' miRNA: 3'- -GUGGUGG---UGGUCUa---GGuCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 21837 | 0.66 | 0.900817 |
Target: 5'- gACCACCACuCGGA-CCAacaucaccuuGAGGGCCa -3' miRNA: 3'- gUGGUGGUG-GUCUaGGUc---------CUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 21881 | 0.74 | 0.500872 |
Target: 5'- gACCACCAgCAGGaCCA-GAGGACCa -3' miRNA: 3'- gUGGUGGUgGUCUaGGUcCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 21959 | 0.67 | 0.860363 |
Target: 5'- gACCAggagauCCAGuaCCAGGAGGACCa -3' miRNA: 3'- gUGGUggu---GGUCuaGGUCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 21989 | 0.76 | 0.388042 |
Target: 5'- gACCuCCACUuGGaCCAGGAGGACCUg -3' miRNA: 3'- gUGGuGGUGGuCUaGGUCCUCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 22061 | 0.74 | 0.51017 |
Target: 5'- gACCACCAgCAGGaCCAGuuGGACCUg -3' miRNA: 3'- gUGGUGGUgGUCUaGGUCcuCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 22108 | 0.76 | 0.4126 |
Target: 5'- -uCCACCACuCGGA-CCuGGAGGACCa -3' miRNA: 3'- guGGUGGUG-GUCUaGGuCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 22161 | 0.74 | 0.491649 |
Target: 5'- --nCACCACUAGGaCCuGGAGGACCa -3' miRNA: 3'- gugGUGGUGGUCUaGGuCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 22184 | 0.84 | 0.151534 |
Target: 5'- gACCACCACUAGGaCCuGGAGGACCa -3' miRNA: 3'- gUGGUGGUGGUCUaGGuCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 22224 | 0.67 | 0.888153 |
Target: 5'- nCACUuggACCAUCuGGaCCuGGAGGACCa -3' miRNA: 3'- -GUGG---UGGUGGuCUaGGuCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 22254 | 0.77 | 0.356828 |
Target: 5'- gCACCAgcagauCCAgCAGGaCCAGGAGGACCa -3' miRNA: 3'- -GUGGU------GGUgGUCUaGGUCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23148 | 0.67 | 0.88419 |
Target: 5'- gACCAgaugguccuacagguCCACCAGGUCCAGGuaauacAGGAa-- -3' miRNA: 3'- gUGGU---------------GGUGGUCUAGGUCC------UCCUgga -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23153 | 0.66 | 0.90683 |
Target: 5'- gAgCACCAgCAGGaCCAGuuGGACCUg -3' miRNA: 3'- gUgGUGGUgGUCUaGGUCcuCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23225 | 0.87 | 0.099106 |
Target: 5'- gACCACCAgCAGGaCCAGGAGGACCa -3' miRNA: 3'- gUGGUGGUgGUCUaGGUCCUCCUGGa -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23256 | 0.71 | 0.655367 |
Target: 5'- uCAUCACCAgCAGGaCCAGuuGGACCUg -3' miRNA: 3'- -GUGGUGGUgGUCUaGGUCcuCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23306 | 0.7 | 0.732589 |
Target: 5'- gACCaguuggACCACC-GAUaCCuGGAGGACCUu -3' miRNA: 3'- gUGG------UGGUGGuCUA-GGuCCUCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23420 | 0.68 | 0.84531 |
Target: 5'- gACCuguaggACCAUCuGGUCCAGuuGGACCUg -3' miRNA: 3'- gUGG------UGGUGGuCUAGGUCcuCCUGGA- -5' |
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31661 | 3' | -57.8 | NC_006883.1 | + | 23708 | 0.72 | 0.606288 |
Target: 5'- gACCugCuggACCAGAUggaCCuGGAGGACCa -3' miRNA: 3'- gUGGugG---UGGUCUA---GGuCCUCCUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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