miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 3' -50.9 NC_006883.1 + 16182 0.66 0.999377
Target:  5'- -uGGUGCUGGUGGGACUGGUaaacuUGGACUg -3'
miRNA:   3'- ggUUAUGGUCGUCUUGGUCA-----GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 22755 0.66 0.999238
Target:  5'- gCAcUAUCAGCAGAACCacuaacauuagcAGUUGcACCc -3'
miRNA:   3'- gGUuAUGGUCGUCUUGG------------UCAGCcUGG- -5'
31662 3' -50.9 NC_006883.1 + 79969 0.66 0.99888
Target:  5'- uUCAG-AUUAGCAGAugCAGguaUCGGAaCCc -3'
miRNA:   3'- -GGUUaUGGUCGUCUugGUC---AGCCU-GG- -5'
31662 3' -50.9 NC_006883.1 + 28426 0.67 0.998387
Target:  5'- aUCAGaACCAuCAGAACCuggaGGACCu -3'
miRNA:   3'- -GGUUaUGGUcGUCUUGGucagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 25002 0.67 0.998387
Target:  5'- aCCuggaggACCGcUAGGACCAcUUGGACCa -3'
miRNA:   3'- -GGuua---UGGUcGUCUUGGUcAGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 212208 0.67 0.998078
Target:  5'- -gGAUACUcaaucaGGUGGAACCAGUUGGuCa -3'
miRNA:   3'- ggUUAUGG------UCGUCUUGGUCAGCCuGg -5'
31662 3' -50.9 NC_006883.1 + 27593 0.67 0.997722
Target:  5'- uCCAGgaggACCuGgAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCgUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27665 0.67 0.997722
Target:  5'- uCCAGgaggACCuGgAGGACCuGcUGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCgUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 41673 0.67 0.997267
Target:  5'- gCAAcACCAGCAGGGuuuuccuuCCAGUUuauuugaGGACUa -3'
miRNA:   3'- gGUUaUGGUCGUCUU--------GGUCAG-------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21985 0.67 0.996841
Target:  5'- uCCAcuuggACCAGgAGGACCuG-CaGGACCa -3'
miRNA:   3'- -GGUua---UGGUCgUCUUGGuCaG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26674 0.68 0.995697
Target:  5'- aCCuggACCuGgAGGACC-GUCuGGACCa -3'
miRNA:   3'- -GGuuaUGGuCgUCUUGGuCAG-CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 27530 0.68 0.995697
Target:  5'- aCCAucuccACCuGUAGGACCuGaUGGACCu -3'
miRNA:   3'- -GGUua---UGGuCGUCUUGGuCaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21917 0.68 0.994235
Target:  5'- ----gACCAGCAucACCuugCGGACCu -3'
miRNA:   3'- gguuaUGGUCGUcuUGGucaGCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 106679 0.68 0.993366
Target:  5'- -aAGUugCAGCAGcACCAGUUccACCa -3'
miRNA:   3'- ggUUAugGUCGUCuUGGUCAGccUGG- -5'
31662 3' -50.9 NC_006883.1 + 26758 0.69 0.992084
Target:  5'- aCCAGUugcACCAGCAGGACCAuuacuuccaucuGcUCcaucauuuccaggaGGACCu -3'
miRNA:   3'- -GGUUA---UGGUCGUCUUGGU------------C-AG--------------CCUGG- -5'
31662 3' -50.9 NC_006883.1 + 21771 0.69 0.991316
Target:  5'- ----gACCuGgAGGACCAGaaGGACCa -3'
miRNA:   3'- gguuaUGGuCgUCUUGGUCagCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 23434 0.69 0.990118
Target:  5'- aCCuggACCuGguGGACCuGUaGGACCa -3'
miRNA:   3'- -GGuuaUGGuCguCUUGGuCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 112593 0.7 0.985739
Target:  5'- aCCAGUagcACCAcCAGAuccACCAGUaccaccaucagcUGGACCg -3'
miRNA:   3'- -GGUUA---UGGUcGUCU---UGGUCA------------GCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 26560 0.7 0.98399
Target:  5'- uCCAGgaggACCuGCuGGACCuGUaGGACCu -3'
miRNA:   3'- -GGUUa---UGGuCGuCUUGGuCAgCCUGG- -5'
31662 3' -50.9 NC_006883.1 + 28066 0.7 0.983435
Target:  5'- uCCAGguCCAgGCGGAACUGGUCcugcugguccuccaGGACCu -3'
miRNA:   3'- -GGUUauGGU-CGUCUUGGUCAG--------------CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.