miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31662 5' -55.3 NC_006883.1 + 21704 0.66 0.967404
Target:  5'- uGGuCCUGCaGGuCCUccUGGUCCAAg -3'
miRNA:   3'- uCCuGGACGaCCuGGAcaACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 26521 0.66 0.964223
Target:  5'- uGGuCCUGCUGGuCCaccaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCuGGacaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28169 0.66 0.960831
Target:  5'- cAGGACCaGUUGGACCaGU---UCCAc -3'
miRNA:   3'- -UCCUGGaCGACCUGGaCAacuAGGUu -5'
31662 5' -55.3 NC_006883.1 + 22957 0.66 0.960831
Target:  5'- uGGuCCUGCUGGugguCCUccaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCu---GGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23058 0.66 0.953394
Target:  5'- aAGGuCCUGCUGGuuCUccaGGUCCAAc -3'
miRNA:   3'- -UCCuGGACGACCugGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 27551 0.67 0.945061
Target:  5'- uGGACCacCUGGACCUGgagGA-CCAu -3'
miRNA:   3'- uCCUGGacGACCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 26359 0.67 0.945061
Target:  5'- uGGuCCUGCUGGuCCcacagGUggaacUGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCuGGa----CA-----ACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23692 0.67 0.943284
Target:  5'- uGGACCUGgaGGACCagcaggaccaGGUCCAc -3'
miRNA:   3'- uCCUGGACgaCCUGGacaa------CUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 22219 0.67 0.930828
Target:  5'- uGGACCauCUGGACCUGgaGGaCCAGc -3'
miRNA:   3'- uCCUGGacGACCUGGACaaCUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21901 0.67 0.925616
Target:  5'- cGGACCuUGC-GGACCUGgagGA-CCAc -3'
miRNA:   3'- uCCUGG-ACGaCCUGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 21774 0.67 0.920168
Target:  5'- aAGGACCUGgaGGACCaGaagGA-CCAGu -3'
miRNA:   3'- -UCCUGGACgaCCUGGaCaa-CUaGGUU- -5'
31662 5' -55.3 NC_006883.1 + 23416 0.68 0.914487
Target:  5'- uGGuCCUGCUGGuCCUccaGGUCCAu -3'
miRNA:   3'- uCCuGGACGACCuGGAcaaCUAGGUu -5'
31662 5' -55.3 NC_006883.1 + 26485 0.68 0.914487
Target:  5'- uGGuCCUGCUGGugcaacugguCCUGcaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCu---------GGACaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 222776 0.68 0.908572
Target:  5'- uGGuCCUuCUGGugguCCUGUUGGUCCu- -3'
miRNA:   3'- uCCuGGAcGACCu---GGACAACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 222722 0.69 0.882624
Target:  5'- uGGuCCUGCUGGuucGCCUGgugcaacUGGUCCu- -3'
miRNA:   3'- uCCuGGACGACC---UGGACa------ACUAGGuu -5'
31662 5' -55.3 NC_006883.1 + 21461 0.69 0.875582
Target:  5'- uGGuCCUGCUGGuCCUccaGGUCCAAc -3'
miRNA:   3'- uCCuGGACGACCuGGAcaaCUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 21935 0.69 0.868326
Target:  5'- uGGuCCUGCUGGuCCUccagGUcagaUGGUCCAAg -3'
miRNA:   3'- uCCuGGACGACCuGGA----CA----ACUAGGUU- -5'
31662 5' -55.3 NC_006883.1 + 28460 0.69 0.868326
Target:  5'- uAGGACCUGgaGGuCCUGgagGA-CCAc -3'
miRNA:   3'- -UCCUGGACgaCCuGGACaa-CUaGGUu -5'
31662 5' -55.3 NC_006883.1 + 23937 0.69 0.868326
Target:  5'- cGGACCaGUUGGACCaGUUGGaCCu- -3'
miRNA:   3'- uCCUGGaCGACCUGGaCAACUaGGuu -5'
31662 5' -55.3 NC_006883.1 + 222677 0.69 0.860861
Target:  5'- uGGuCCUGCUGGuCCUGcugguggaacUGGUCCAc -3'
miRNA:   3'- uCCuGGACGACCuGGACa---------ACUAGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.