miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31663 3' -56 NC_006883.1 + 27890 0.66 0.971154
Target:  5'- uUCAGguGGaACUGGUccaacUGGuCCUGCuGGu -3'
miRNA:   3'- -GGUCguCC-UGGUCA-----ACCuGGACGuCC- -5'
31663 3' -56 NC_006883.1 + 28420 0.66 0.968317
Target:  5'- aCCAuCAGaACCuGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGUcGUCcUGGuCaaCCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 23140 0.66 0.968317
Target:  5'- uCCAaCuGGACCAGaUGGuCCUaCAGGu -3'
miRNA:   3'- -GGUcGuCCUGGUCaACCuGGAcGUCC- -5'
31663 3' -56 NC_006883.1 + 28534 0.66 0.962059
Target:  5'- aCCuGaAGGACCuGUUGGACCaGUuGGn -3'
miRNA:   3'- -GGuCgUCCUGGuCAACCUGGaCGuCC- -5'
31663 3' -56 NC_006883.1 + 21851 0.66 0.961389
Target:  5'- uCCAGUAGGACCAGgaccaccacucGGACCa----- -3'
miRNA:   3'- -GGUCGUCCUGGUCaa---------CCUGGacgucc -5'
31663 3' -56 NC_006883.1 + 28297 0.67 0.951142
Target:  5'- aCCAGUAGGACCAGUUGGn-------- -3'
miRNA:   3'- -GGUCGUCCUGGUCAACCuggacgucc -5'
31663 3' -56 NC_006883.1 + 112299 0.67 0.951142
Target:  5'- uCCAGCugaugguGGuACUGG-UGGAUCUGguGGu -3'
miRNA:   3'- -GGUCGu------CC-UGGUCaACCUGGACguCC- -5'
31663 3' -56 NC_006883.1 + 210943 0.67 0.94624
Target:  5'- aCCAGaaucuacaaguGGACCAGUUGGccaACCaaaUGCAGc -3'
miRNA:   3'- -GGUCgu---------CCUGGUCAACC---UGG---ACGUCc -5'
31663 3' -56 NC_006883.1 + 26686 0.67 0.938301
Target:  5'- aCCAGUuccACCAccUGGACCUGgAGGa -3'
miRNA:   3'- -GGUCGuccUGGUcaACCUGGACgUCC- -5'
31663 3' -56 NC_006883.1 + 27287 0.67 0.933582
Target:  5'- uCCAGguGGuCCAGguggUGGcacagguCCaGCAGGu -3'
miRNA:   3'- -GGUCguCCuGGUCa---ACCu------GGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 23343 0.67 0.933582
Target:  5'- ------nGACCAGUUGGACCUGgAGa -3'
miRNA:   3'- ggucgucCUGGUCAACCUGGACgUCc -5'
31663 3' -56 NC_006883.1 + 111850 0.68 0.92557
Target:  5'- aCAGCAGGACaaucauauacuguagUAGUuggugauggUGGAgCUGguGGa -3'
miRNA:   3'- gGUCGUCCUG---------------GUCA---------ACCUgGACguCC- -5'
31663 3' -56 NC_006883.1 + 22889 0.68 0.918094
Target:  5'- uCCuGCuGGugcuCCAGguuuaacUGGACCUGCuGGu -3'
miRNA:   3'- -GGuCGuCCu---GGUCa------ACCUGGACGuCC- -5'
31663 3' -56 NC_006883.1 + 105876 0.68 0.918094
Target:  5'- -uGGCAGGAUUGGaugaUGGuCCUGguGGa -3'
miRNA:   3'- ggUCGUCCUGGUCa---ACCuGGACguCC- -5'
31663 3' -56 NC_006883.1 + 26488 0.68 0.906662
Target:  5'- uCCuGCuGGugCAacUGGuCCUGCAGGu -3'
miRNA:   3'- -GGuCGuCCugGUcaACCuGGACGUCC- -5'
31663 3' -56 NC_006883.1 + 26272 0.68 0.906662
Target:  5'- uCCAGCAGGuCCuacaGGuCCaGCAGGu -3'
miRNA:   3'- -GGUCGUCCuGGucaaCCuGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 27485 0.69 0.894357
Target:  5'- aCCuGUAGGACCAGgaGcACCUuGCGGa -3'
miRNA:   3'- -GGuCGUCCUGGUCaaCcUGGA-CGUCc -5'
31663 3' -56 NC_006883.1 + 23680 0.69 0.867223
Target:  5'- aCCAGCAGGACCAGguccaccACCaGCAc- -3'
miRNA:   3'- -GGUCGUCCUGGUCaacc---UGGaCGUcc -5'
31663 3' -56 NC_006883.1 + 26988 0.69 0.867223
Target:  5'- aCCAGgAGGACCuGgaGaACCaGCAGGa -3'
miRNA:   3'- -GGUCgUCCUGGuCaaCcUGGaCGUCC- -5'
31663 3' -56 NC_006883.1 + 25020 0.71 0.795287
Target:  5'- uCCuGUuGGACCuGgaGGACCUGgAGGa -3'
miRNA:   3'- -GGuCGuCCUGGuCaaCCUGGACgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.