miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31664 3' -57.7 NC_006883.1 + 139209 0.66 0.939842
Target:  5'- uGGACCACCUGGuaUUGGAaaGACUAc- -3'
miRNA:   3'- -CCUGGUGGACCugGACCUc-CUGGUag -5'
31664 3' -57.7 NC_006883.1 + 223839 0.66 0.939842
Target:  5'- uGGAUUAUCUGcACCUGGAucaGGAgCAUUu -3'
miRNA:   3'- -CCUGGUGGACcUGGACCU---CCUgGUAG- -5'
31664 3' -57.7 NC_006883.1 + 21961 0.66 0.935244
Target:  5'- aGGACCAggagauCCaGuACCaGGAGGACCAg- -3'
miRNA:   3'- -CCUGGU------GGaCcUGGaCCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23391 0.66 0.930429
Target:  5'- uGGACU--CUGGugCUGGugguGGACCugGUCc -3'
miRNA:   3'- -CCUGGugGACCugGACCu---CCUGG--UAG- -5'
31664 3' -57.7 NC_006883.1 + 22913 0.67 0.903095
Target:  5'- uGGACCugCUGGuCCUGauGGuCCAa- -3'
miRNA:   3'- -CCUGGugGACCuGGACcuCCuGGUag -5'
31664 3' -57.7 NC_006883.1 + 27731 0.67 0.896984
Target:  5'- uGGuCCugUgGGACCUGucGGACCAg- -3'
miRNA:   3'- -CCuGGugGaCCUGGACcuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 24987 0.67 0.890662
Target:  5'- aGGACCACUUGGACCacUu--GGACCu-- -3'
miRNA:   3'- -CCUGGUGGACCUGG--AccuCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 28231 0.67 0.884133
Target:  5'- aGGACCAgCaGGACCaGucGGACCAg- -3'
miRNA:   3'- -CCUGGUgGaCCUGGaCcuCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23470 0.69 0.824978
Target:  5'- aGGuCCuCCUGGAUCUGGugguGGugCAa- -3'
miRNA:   3'- -CCuGGuGGACCUGGACCu---CCugGUag -5'
31664 3' -57.7 NC_006883.1 + 222944 0.69 0.791377
Target:  5'- aGGACCAgCaGGACCaGGAGaACCAg- -3'
miRNA:   3'- -CCUGGUgGaCCUGGaCCUCcUGGUag -5'
31664 3' -57.7 NC_006883.1 + 26653 0.69 0.791377
Target:  5'- uGGACCAgUUGGACCaguuccaccUGuGGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGG---------ACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 21839 0.69 0.789638
Target:  5'- aGGACCACCacucGGACCaacaucaccuuGAGGGCCAg- -3'
miRNA:   3'- -CCUGGUGGa---CCUGGac---------CUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28168 0.7 0.773762
Target:  5'- aGGACCAgUUGGACCaguuccaccUGaAGGACCAg- -3'
miRNA:   3'- -CCUGGUgGACCUGG---------ACcUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 22246 0.7 0.773762
Target:  5'- aGAuCCAgCaGGACCaGGAGGACCAc- -3'
miRNA:   3'- cCU-GGUgGaCCUGGaCCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 23404 0.7 0.737214
Target:  5'- uGGuCCAgUUGGACCUGuGGGACCu-- -3'
miRNA:   3'- -CCuGGUgGACCUGGACcUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 28132 0.7 0.737214
Target:  5'- uGGACCAgUUGGACCUGuAGGuCCu-- -3'
miRNA:   3'- -CCUGGUgGACCUGGACcUCCuGGuag -5'
31664 3' -57.7 NC_006883.1 + 28368 0.7 0.737214
Target:  5'- ---gCACCaGGAgguCCUGGAGGACCAg- -3'
miRNA:   3'- ccugGUGGaCCU---GGACCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 27603 0.71 0.7089
Target:  5'- -cACCAUCauuuccaggaGGACCUGGAGGACCu-- -3'
miRNA:   3'- ccUGGUGGa---------CCUGGACCUCCUGGuag -5'
31664 3' -57.7 NC_006883.1 + 23222 0.71 0.699333
Target:  5'- -nACCAgCaGGACCaGGAGGACCAg- -3'
miRNA:   3'- ccUGGUgGaCCUGGaCCUCCUGGUag -5'
31664 3' -57.7 NC_006883.1 + 28528 0.73 0.582657
Target:  5'- aGGACCugUUGGACCaGuuGGACCAg- -3'
miRNA:   3'- -CCUGGugGACCUGGaCcuCCUGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.