miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31665 3' -53.9 NC_006883.1 + 243010 0.66 0.991386
Target:  5'- aUCAUUggCCAGGAGG-UCUGucAGGugUa -3'
miRNA:   3'- -AGUAAa-GGUCCUCCuGGACc-UCCugG- -5'
31665 3' -53.9 NC_006883.1 + 28542 0.66 0.985938
Target:  5'- nCAcUUCCAccuGaAGGACCUGuuGGACCa -3'
miRNA:   3'- aGUaAAGGU---CcUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27529 0.66 0.984233
Target:  5'- nCAUcUCCaccuguAGGAccugauGGACCUGuAGGACCu -3'
miRNA:   3'- aGUAaAGG------UCCU------CCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27729 0.66 0.984233
Target:  5'- ----gUCCuGuGGGACCUGucGGACCa -3'
miRNA:   3'- aguaaAGGuCcUCCUGGACcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28303 0.67 0.982376
Target:  5'- aUCAUcaCCAGuAGGACCaGuuGGACCa -3'
miRNA:   3'- -AGUAaaGGUCcUCCUGGaCcuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21877 0.67 0.975815
Target:  5'- -----aCCAGcAGGACCa-GAGGACCa -3'
miRNA:   3'- aguaaaGGUCcUCCUGGacCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23452 0.68 0.963199
Target:  5'- aUCAaucgUUCCuguauuaccuGGACCUGGuGGACCu -3'
miRNA:   3'- -AGUa---AAGGuccu------CCUGGACCuCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 28067 0.68 0.959082
Target:  5'- cCAggUCCAGGcGGAaCUGGuccugcugguccuccAGGACCu -3'
miRNA:   3'- aGUaaAGGUCCuCCUgGACC---------------UCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23925 0.69 0.936682
Target:  5'- -----aCCAGuuGGACCUGuAGGACCu -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 24948 0.7 0.926721
Target:  5'- -----aCCuGuAGGACCUGGAGGAgCa -3'
miRNA:   3'- aguaaaGGuCcUCCUGGACCUCCUgG- -5'
31665 3' -53.9 NC_006883.1 + 23145 0.7 0.926721
Target:  5'- gCAggaCCAGuuGGACCUGGAGcACCu -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACCUCcUGG- -5'
31665 3' -53.9 NC_006883.1 + 23374 0.7 0.921397
Target:  5'- -----aCCAGuuGGACCUGGAuuugaaGGACCu -3'
miRNA:   3'- aguaaaGGUCcuCCUGGACCU------CCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22053 0.71 0.897834
Target:  5'- gCAggaCCAGuuGGACCUGuAGGACCg -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 26781 0.71 0.897834
Target:  5'- gCAggaCCAGuuGGACCUGcAGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 27760 0.71 0.897834
Target:  5'- gCAggaCCAGuuGGACCUGuGGGACCa -3'
miRNA:   3'- aGUaaaGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 21856 0.71 0.891386
Target:  5'- gCAggUCCAGuAGGACCaGGAccaccacucGGACCa -3'
miRNA:   3'- aGUaaAGGUCcUCCUGGaCCU---------CCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23323 0.73 0.789604
Target:  5'- -----aCCAGcAGGACCUuGAGGACCa -3'
miRNA:   3'- aguaaaGGUCcUCCUGGAcCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 23407 0.74 0.743483
Target:  5'- aUCuggUCCAGuuGGACCUGuGGGACCu -3'
miRNA:   3'- -AGuaaAGGUCcuCCUGGACcUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 211186 0.74 0.733946
Target:  5'- gUAUgcaCAGGAuGGAgcuuauCCUGGAGGACCa -3'
miRNA:   3'- aGUAaagGUCCU-CCU------GGACCUCCUGG- -5'
31665 3' -53.9 NC_006883.1 + 22216 0.76 0.655319
Target:  5'- -----aCCAucuGGACCUGGAGGACCa -3'
miRNA:   3'- aguaaaGGUccuCCUGGACCUCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.