miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31666 3' -54.8 NC_006883.1 + 22147 0.66 0.979101
Target:  5'- -uGgAGGACCAGgugaaccacUUGGACCAGcaggaCCAu -3'
miRNA:   3'- guCgUCCUGGUC---------AACCUGGUCaa---GGU- -5'
31666 3' -54.8 NC_006883.1 + 28486 0.66 0.979101
Target:  5'- ----uGGACCAGgaGGACCAucUCCAn -3'
miRNA:   3'- gucguCCUGGUCaaCCUGGUcaAGGU- -5'
31666 3' -54.8 NC_006883.1 + 23425 0.66 0.974314
Target:  5'- -uGguGGACCuGUaGGACCAucuggUCCAg -3'
miRNA:   3'- guCguCCUGGuCAaCCUGGUca---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 137557 0.66 0.971642
Target:  5'- aAGCAGGugCAGUUaGACUuguuGUUCg- -3'
miRNA:   3'- gUCGUCCugGUCAAcCUGGu---CAAGgu -5'
31666 3' -54.8 NC_006883.1 + 22093 0.67 0.962438
Target:  5'- -uGgAGGACCAcUUGGACCAGgaggaCCu -3'
miRNA:   3'- guCgUCCUGGUcAACCUGGUCaa---GGu -5'
31666 3' -54.8 NC_006883.1 + 27644 0.67 0.958954
Target:  5'- -uGCuGGACCuGgaGuACCAGUUCCAc -3'
miRNA:   3'- guCGuCCUGGuCaaCcUGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 28464 0.68 0.942826
Target:  5'- cCAGUAGGACCuggagguccuGgaGGACCAcUUCCu -3'
miRNA:   3'- -GUCGUCCUGGu---------CaaCCUGGUcAAGGu -5'
31666 3' -54.8 NC_006883.1 + 33054 0.68 0.928343
Target:  5'- gCAGCAGGAUuagaaaCAGUcuuaauauauugUGGugUAGUUCUAu -3'
miRNA:   3'- -GUCGUCCUG------GUCA------------ACCugGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 28558 0.69 0.899586
Target:  5'- -uGguGGACCuGgaGGACCAcUUCCAc -3'
miRNA:   3'- guCguCCUGGuCaaCCUGGUcAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 23913 0.7 0.87962
Target:  5'- -uGUAGGACCuGcUGGACCuGUugaUCCAa -3'
miRNA:   3'- guCGUCCUGGuCaACCUGGuCA---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 23346 0.71 0.834072
Target:  5'- --aCAGGACCAGUUGGACCuGg---- -3'
miRNA:   3'- gucGUCCUGGUCAACCUGGuCaaggu -5'
31666 3' -54.8 NC_006883.1 + 111686 0.71 0.825819
Target:  5'- aCAGCAGGAacuuaUAGUUGGACUug-UCCu -3'
miRNA:   3'- -GUCGUCCUg----GUCAACCUGGucaAGGu -5'
31666 3' -54.8 NC_006883.1 + 27725 0.71 0.817396
Target:  5'- -uGUGGGACCuGUcGGACCAGUaggaccugaUCCAc -3'
miRNA:   3'- guCGUCCUGGuCAaCCUGGUCA---------AGGU- -5'
31666 3' -54.8 NC_006883.1 + 23380 0.71 0.800067
Target:  5'- -uGUGGGACCAGUUGGACCuggauuugaAGgaCCu -3'
miRNA:   3'- guCGUCCUGGUCAACCUGG---------UCaaGGu -5'
31666 3' -54.8 NC_006883.1 + 21975 0.72 0.782149
Target:  5'- cCAGgAGGACCuGcaGGACCAGgagaUCCAg -3'
miRNA:   3'- -GUCgUCCUGGuCaaCCUGGUCa---AGGU- -5'
31666 3' -54.8 NC_006883.1 + 77879 0.72 0.77299
Target:  5'- uGGUAGGACaaaGGUaaUGGaACCAGUUUCAg -3'
miRNA:   3'- gUCGUCCUGg--UCA--ACC-UGGUCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 28271 0.72 0.754315
Target:  5'- -nGCcuGGACCAGUUGGACCuggAGgaCCAu -3'
miRNA:   3'- guCGu-CCUGGUCAACCUGG---UCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 26712 0.72 0.744816
Target:  5'- cCAGgAGGACCuGcUGGACCuggaguaccAGUUCCAc -3'
miRNA:   3'- -GUCgUCCUGGuCaACCUGG---------UCAAGGU- -5'
31666 3' -54.8 NC_006883.1 + 22204 0.73 0.735222
Target:  5'- -uGgAGGACCAGcaGGACCAGgaCCAc -3'
miRNA:   3'- guCgUCCUGGUCaaCCUGGUCaaGGU- -5'
31666 3' -54.8 NC_006883.1 + 23686 0.75 0.635935
Target:  5'- -uGgAGGACCAGcaGGACCAGgUCCAc -3'
miRNA:   3'- guCgUCCUGGUCaaCCUGGUCaAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.