Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31666 | 3' | -54.8 | NC_006883.1 | + | 22147 | 0.66 | 0.979101 |
Target: 5'- -uGgAGGACCAGgugaaccacUUGGACCAGcaggaCCAu -3' miRNA: 3'- guCgUCCUGGUC---------AACCUGGUCaa---GGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 28486 | 0.66 | 0.979101 |
Target: 5'- ----uGGACCAGgaGGACCAucUCCAn -3' miRNA: 3'- gucguCCUGGUCaaCCUGGUcaAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23425 | 0.66 | 0.974314 |
Target: 5'- -uGguGGACCuGUaGGACCAucuggUCCAg -3' miRNA: 3'- guCguCCUGGuCAaCCUGGUca---AGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 137557 | 0.66 | 0.971642 |
Target: 5'- aAGCAGGugCAGUUaGACUuguuGUUCg- -3' miRNA: 3'- gUCGUCCugGUCAAcCUGGu---CAAGgu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 22093 | 0.67 | 0.962438 |
Target: 5'- -uGgAGGACCAcUUGGACCAGgaggaCCu -3' miRNA: 3'- guCgUCCUGGUcAACCUGGUCaa---GGu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 27644 | 0.67 | 0.958954 |
Target: 5'- -uGCuGGACCuGgaGuACCAGUUCCAc -3' miRNA: 3'- guCGuCCUGGuCaaCcUGGUCAAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 28464 | 0.68 | 0.942826 |
Target: 5'- cCAGUAGGACCuggagguccuGgaGGACCAcUUCCu -3' miRNA: 3'- -GUCGUCCUGGu---------CaaCCUGGUcAAGGu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 33054 | 0.68 | 0.928343 |
Target: 5'- gCAGCAGGAUuagaaaCAGUcuuaauauauugUGGugUAGUUCUAu -3' miRNA: 3'- -GUCGUCCUG------GUCA------------ACCugGUCAAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 28558 | 0.69 | 0.899586 |
Target: 5'- -uGguGGACCuGgaGGACCAcUUCCAc -3' miRNA: 3'- guCguCCUGGuCaaCCUGGUcAAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23913 | 0.7 | 0.87962 |
Target: 5'- -uGUAGGACCuGcUGGACCuGUugaUCCAa -3' miRNA: 3'- guCGUCCUGGuCaACCUGGuCA---AGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23346 | 0.71 | 0.834072 |
Target: 5'- --aCAGGACCAGUUGGACCuGg---- -3' miRNA: 3'- gucGUCCUGGUCAACCUGGuCaaggu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 111686 | 0.71 | 0.825819 |
Target: 5'- aCAGCAGGAacuuaUAGUUGGACUug-UCCu -3' miRNA: 3'- -GUCGUCCUg----GUCAACCUGGucaAGGu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 27725 | 0.71 | 0.817396 |
Target: 5'- -uGUGGGACCuGUcGGACCAGUaggaccugaUCCAc -3' miRNA: 3'- guCGUCCUGGuCAaCCUGGUCA---------AGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23380 | 0.71 | 0.800067 |
Target: 5'- -uGUGGGACCAGUUGGACCuggauuugaAGgaCCu -3' miRNA: 3'- guCGUCCUGGUCAACCUGG---------UCaaGGu -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 21975 | 0.72 | 0.782149 |
Target: 5'- cCAGgAGGACCuGcaGGACCAGgagaUCCAg -3' miRNA: 3'- -GUCgUCCUGGuCaaCCUGGUCa---AGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 77879 | 0.72 | 0.77299 |
Target: 5'- uGGUAGGACaaaGGUaaUGGaACCAGUUUCAg -3' miRNA: 3'- gUCGUCCUGg--UCA--ACC-UGGUCAAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 28271 | 0.72 | 0.754315 |
Target: 5'- -nGCcuGGACCAGUUGGACCuggAGgaCCAu -3' miRNA: 3'- guCGu-CCUGGUCAACCUGG---UCaaGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 26712 | 0.72 | 0.744816 |
Target: 5'- cCAGgAGGACCuGcUGGACCuggaguaccAGUUCCAc -3' miRNA: 3'- -GUCgUCCUGGuCaACCUGG---------UCAAGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 22204 | 0.73 | 0.735222 |
Target: 5'- -uGgAGGACCAGcaGGACCAGgaCCAc -3' miRNA: 3'- guCgUCCUGGUCaaCCUGGUCaaGGU- -5' |
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31666 | 3' | -54.8 | NC_006883.1 | + | 23686 | 0.75 | 0.635935 |
Target: 5'- -uGgAGGACCAGcaGGACCAGgUCCAc -3' miRNA: 3'- guCgUCCUGGUCaaCCUGGUCaAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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