miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31667 3' -57.7 NC_006883.1 + 27605 0.66 0.943773
Target:  5'- -aGCaccaucauuuCCAGgaGGACCUGGAGGa -3'
miRNA:   3'- ggCGgaccu-----GGUCaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 27524 0.66 0.932958
Target:  5'- uCCaCCUguaGGACCuGaUGGACCUGuAGGa -3'
miRNA:   3'- -GGcGGA---CCUGGuCaACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 28593 0.66 0.931521
Target:  5'- gUGCCUGaaggaauuacuguaGcACCugaAGUuccuggUGGACCUGGAGGa -3'
miRNA:   3'- gGCGGAC--------------C-UGG---UCA------ACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 28174 0.67 0.92301
Target:  5'- aCCaGCa-GGACCAGUUGGACCa----- -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGaccucc -5'
31667 3' -57.7 NC_006883.1 + 26550 0.67 0.91221
Target:  5'- cCUG-CUGGACCuGUaGGACCUGcuGGa -3'
miRNA:   3'- -GGCgGACCUGGuCAaCCUGGACcuCC- -5'
31667 3' -57.7 NC_006883.1 + 27005 0.67 0.91221
Target:  5'- aCUGUUUGaaaaccagaACCAGgaGGACCUGGAGa -3'
miRNA:   3'- -GGCGGACc--------UGGUCaaCCUGGACCUCc -5'
31667 3' -57.7 NC_006883.1 + 222950 0.67 0.894431
Target:  5'- aCCaGCa-GGACCAGcaGGACCaGGAGa -3'
miRNA:   3'- -GG-CGgaCCUGGUCaaCCUGGaCCUCc -5'
31667 3' -57.7 NC_006883.1 + 27493 0.68 0.874815
Target:  5'- cCUG-CUGGACCuGUaGGACCaGGAGc -3'
miRNA:   3'- -GGCgGACCUGGuCAaCCUGGaCCUCc -5'
31667 3' -57.7 NC_006883.1 + 222734 0.68 0.860763
Target:  5'- uUCGCCUGGugCAacugguccuGUUGGAaauCCUGGuccuacuGGu -3'
miRNA:   3'- -GGCGGACCugGU---------CAACCU---GGACCu------CC- -5'
31667 3' -57.7 NC_006883.1 + 27718 0.68 0.860763
Target:  5'- cCUGUC-GGACCAGUaGGACCUGa--- -3'
miRNA:   3'- -GGCGGaCCUGGUCAaCCUGGACcucc -5'
31667 3' -57.7 NC_006883.1 + 22132 0.69 0.845974
Target:  5'- aCCaCUUGGACCAGcaggaccaUcuccaccacucGGACCUGGAGGn -3'
miRNA:   3'- -GGcGGACCUGGUCa-------A-----------CCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 27658 0.69 0.830494
Target:  5'- -gGaCCUggaGGACCuGcUGGACCUGGAGu -3'
miRNA:   3'- ggC-GGA---CCUGGuCaACCUGGACCUCc -5'
31667 3' -57.7 NC_006883.1 + 23434 0.7 0.789095
Target:  5'- --aCCUGGACCuGgUGGACCUGuAGGn -3'
miRNA:   3'- ggcGGACCUGGuCaACCUGGACcUCC- -5'
31667 3' -57.7 NC_006883.1 + 21910 0.7 0.771602
Target:  5'- aUCaCCUugcGGACCuugcGGACCUGGAGGa -3'
miRNA:   3'- -GGcGGA---CCUGGucaaCCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 28524 0.7 0.771602
Target:  5'- cCUG-UUGGACCAGUUGGACCaGucGGa -3'
miRNA:   3'- -GGCgGACCUGGUCAACCUGGaCcuCC- -5'
31667 3' -57.7 NC_006883.1 + 24993 0.72 0.697811
Target:  5'- aCCGCUaGGACCAcUUGGACCacuUGGAc- -3'
miRNA:   3'- -GGCGGaCCUGGUcAACCUGG---ACCUcc -5'
31667 3' -57.7 NC_006883.1 + 26623 0.72 0.669116
Target:  5'- aCCaGCa-GGACCAGUUGGACCUGu--- -3'
miRNA:   3'- -GG-CGgaCCUGGUCAACCUGGACcucc -5'
31667 3' -57.7 NC_006883.1 + 23728 0.72 0.659488
Target:  5'- -----aGGACCuGcUGGACCUGGAGGa -3'
miRNA:   3'- ggcggaCCUGGuCaACCUGGACCUCC- -5'
31667 3' -57.7 NC_006883.1 + 21937 0.72 0.659488
Target:  5'- -----aGGACCAGUUGGACCUGuuGGa -3'
miRNA:   3'- ggcggaCCUGGUCAACCUGGACcuCC- -5'
31667 3' -57.7 NC_006883.1 + 28375 0.73 0.64018
Target:  5'- aCCGUCaGcACCAGgaGGuCCUGGAGGa -3'
miRNA:   3'- -GGCGGaCcUGGUCaaCCuGGACCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.