miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31668 3' -59.8 NC_006883.1 + 23446 0.66 0.863748
Target:  5'- -uCCAGcAGGUCCUccAGGuCCAGCAg -3'
miRNA:   3'- guGGUCcUCCAGGAccUCCuGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26272 0.66 0.863748
Target:  5'- -uCCAGcAGGUCCUacAGGuCCAGCAg -3'
miRNA:   3'- guGGUCcUCCAGGAccUCCuGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 21843 0.66 0.856473
Target:  5'- gACCAGGAccaccacucGGaccaacaucaCCUuGAGGGCCAGCAg -3'
miRNA:   3'- gUGGUCCU---------CCa---------GGAcCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 186615 0.66 0.833573
Target:  5'- aCACCAGGAaaacUgCUGaAGGACCAGUAg -3'
miRNA:   3'- -GUGGUCCUcc--AgGACcUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 22122 0.67 0.820739
Target:  5'- cCAgCAGGAccaucuccaccacucGGaCCUGGAGGACCAc-- -3'
miRNA:   3'- -GUgGUCCU---------------CCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 26777 0.67 0.817468
Target:  5'- gACCAGuuGGaCCUGcAGGACCAGUu -3'
miRNA:   3'- gUGGUCcuCCaGGACcUCCUGGUCGu -5'
31668 3' -59.8 NC_006883.1 + 28561 0.67 0.792188
Target:  5'- -uCCuGGuGGaCCUGGAGGACCAc-- -3'
miRNA:   3'- guGGuCCuCCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 26713 0.68 0.765737
Target:  5'- -uCCAGGAGGaccugcuggaCCUGGAGuACCAGUu -3'
miRNA:   3'- guGGUCCUCCa---------GGACCUCcUGGUCGu -5'
31668 3' -59.8 NC_006883.1 + 26669 0.68 0.747553
Target:  5'- gACCuGGAGGaccgUCUGGAccaguuGGACCAGUu -3'
miRNA:   3'- gUGGuCCUCCa---GGACCU------CCUGGUCGu -5'
31668 3' -59.8 NC_006883.1 + 27287 0.68 0.73832
Target:  5'- -uCCAGGuGGUCCaGGugguggcacAGGuCCAGCAg -3'
miRNA:   3'- guGGUCCuCCAGGaCC---------UCCuGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 26560 0.68 0.729003
Target:  5'- -uCCAGGAGGaCCUGcuGGACCuGUAg -3'
miRNA:   3'- guGGUCCUCCaGGACcuCCUGGuCGU- -5'
31668 3' -59.8 NC_006883.1 + 27556 0.69 0.671791
Target:  5'- cCACCuGGAccaccuGGaCCUGGAGGACCAu-- -3'
miRNA:   3'- -GUGGuCCU------CCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 27738 0.7 0.652405
Target:  5'- gACCAGuuGGUCCUGuGGgaccugucGGACCAGUAg -3'
miRNA:   3'- gUGGUCcuCCAGGAC-CU--------CCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 211189 0.7 0.613514
Target:  5'- uGCaCAGGAuGGagcuuaUCCUGGAGGACCA-CAa -3'
miRNA:   3'- gUG-GUCCU-CC------AGGACCUCCUGGUcGU- -5'
31668 3' -59.8 NC_006883.1 + 28265 0.71 0.574821
Target:  5'- gACCAGuuGGaCCUGGAGGACCAu-- -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCCUGGUcgu -5'
31668 3' -59.8 NC_006883.1 + 222933 0.71 0.555672
Target:  5'- gACCAGGAGaaCCaGuAGGACCAGCAg -3'
miRNA:   3'- gUGGUCCUCcaGGaCcUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 21879 0.72 0.517984
Target:  5'- cCACCAGcAGGaCCa-GAGGACCAGCAg -3'
miRNA:   3'- -GUGGUCcUCCaGGacCUCCUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23342 0.72 0.490398
Target:  5'- gACCAGuuGGaCCUGGAGaACCAGCAg -3'
miRNA:   3'- gUGGUCcuCCaGGACCUCcUGGUCGU- -5'
31668 3' -59.8 NC_006883.1 + 23289 0.73 0.472391
Target:  5'- aUACCuGGAGGaCCUuGAGGACCAGgAg -3'
miRNA:   3'- -GUGGuCCUCCaGGAcCUCCUGGUCgU- -5'
31668 3' -59.8 NC_006883.1 + 22161 0.75 0.372214
Target:  5'- cCACCAcuAGGaCCUGGAGGACCAGg- -3'
miRNA:   3'- -GUGGUccUCCaGGACCUCCUGGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.