miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31669 5' -50.6 NC_006883.1 + 21815 0.66 0.999362
Target:  5'- -aCCuUgAGGGCCAgCAGGACCaGGAc -3'
miRNA:   3'- gaGGuAgUCUUGGUaGUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 21987 0.66 0.999362
Target:  5'- cCUCCAcuuGGACCAggaggaccugCAGGACCaGGAg -3'
miRNA:   3'- -GAGGUaguCUUGGUa---------GUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 23952 0.66 0.999362
Target:  5'- -aCCAgCAGAACCAgUCGG-ACCaguUGGAc -3'
miRNA:   3'- gaGGUaGUCUUGGU-AGUCuUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 24957 0.66 0.999362
Target:  5'- -aCCAcuuGGACCugUAGGACCUGGAg -3'
miRNA:   3'- gaGGUaguCUUGGuaGUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 222986 0.66 0.999218
Target:  5'- -aCCAgCAGGACCAgguGAACCUuguGGAc -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGA---CCU- -5'
31669 5' -50.6 NC_006883.1 + 36107 0.66 0.999119
Target:  5'- -gCUAUCGGAuuaccuggcacaguaACCAUCAGAGaagaUGGAa -3'
miRNA:   3'- gaGGUAGUCU---------------UGGUAGUCUUgg--ACCU- -5'
31669 5' -50.6 NC_006883.1 + 187411 0.66 0.999047
Target:  5'- --aCAUCAGGaacACCAUUAGGACUgucuauaucuUGGAu -3'
miRNA:   3'- gagGUAGUCU---UGGUAGUCUUGG----------ACCU- -5'
31669 5' -50.6 NC_006883.1 + 28306 0.66 0.999047
Target:  5'- -aCCAUCAucACCAgUAGGACCaguUGGAc -3'
miRNA:   3'- gaGGUAGUcuUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 23863 0.66 0.998607
Target:  5'- -cCCAUguGAACUAUCAGcauCUUGGu -3'
miRNA:   3'- gaGGUAguCUUGGUAGUCuu-GGACCu -5'
31669 5' -50.6 NC_006883.1 + 26571 0.66 0.998607
Target:  5'- gCUCCAUCAuuuCCAggAGGACCUgcuGGAc -3'
miRNA:   3'- -GAGGUAGUcuuGGUagUCUUGGA---CCU- -5'
31669 5' -50.6 NC_006883.1 + 86134 0.67 0.997633
Target:  5'- uCUCUG-CAGGACCAacaaccaaAGAAUCUGGAg -3'
miRNA:   3'- -GAGGUaGUCUUGGUag------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22252 0.67 0.996708
Target:  5'- -aCCAgCAGAuCCAgCAGGACCaGGAg -3'
miRNA:   3'- gaGGUaGUCUuGGUaGUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 26636 0.68 0.995503
Target:  5'- uUCCAccugUGGGACCAgCAGGACCaguUGGAc -3'
miRNA:   3'- gAGGUa---GUCUUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 25022 0.68 0.994779
Target:  5'- cCUCCuguuGGACCuggAGGACCUGGAg -3'
miRNA:   3'- -GAGGuaguCUUGGuagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27557 0.68 0.993046
Target:  5'- -aCCAcCuGGACCAcCuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGuCUUGGUaGuCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 220943 0.69 0.991352
Target:  5'- cCUUCAUCAGAuuuccaccaaagauuACCAUCAGuaggauuACUUGGu -3'
miRNA:   3'- -GAGGUAGUCU---------------UGGUAGUCu------UGGACCu -5'
31669 5' -50.6 NC_006883.1 + 21788 0.69 0.986678
Target:  5'- -gCCAcCuGGACCAgaAGGACCUGGAg -3'
miRNA:   3'- gaGGUaGuCUUGGUagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28242 0.69 0.984989
Target:  5'- uCUCCAccagUAGGACCAgCAGGACCagucGGAc -3'
miRNA:   3'- -GAGGUa---GUCUUGGUaGUCUUGGa---CCU- -5'
31669 5' -50.6 NC_006883.1 + 23349 0.7 0.981125
Target:  5'- -cCUA-CAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22087 0.7 0.978935
Target:  5'- -aCCAcuuGGACCAggAGGACCUGGAg -3'
miRNA:   3'- gaGGUaguCUUGGUagUCUUGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.