miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 3' -56 NC_006883.1 + 165904 0.66 0.971592
Target:  5'- -aACCUGGAGGACauuuagACUUCCuCUUaGAu -3'
miRNA:   3'- ccUGGACCUCCUGg-----UGAAGGuGGA-CU- -5'
31670 3' -56 NC_006883.1 + 223025 0.66 0.971592
Target:  5'- aGGACCaGGAuuuccaacaGGACCAgUUgCACCa-- -3'
miRNA:   3'- -CCUGGaCCU---------CCUGGUgAAgGUGGacu -5'
31670 3' -56 NC_006883.1 + 21719 0.66 0.968788
Target:  5'- aGGACCaGuAGGACCACcaccguUUCCACUa-- -3'
miRNA:   3'- -CCUGGaCcUCCUGGUG------AAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 21581 0.66 0.965791
Target:  5'- uGGuCCUGGuccuacuGGACCuGCUggUCCuCCUGGu -3'
miRNA:   3'- -CCuGGACCu------CCUGG-UGA--AGGuGGACU- -5'
31670 3' -56 NC_006883.1 + 186560 0.67 0.939068
Target:  5'- uGAUaCUGGAGaACCACcUgCACCUGAg -3'
miRNA:   3'- cCUG-GACCUCcUGGUGaAgGUGGACU- -5'
31670 3' -56 NC_006883.1 + 22006 0.67 0.939068
Target:  5'- aGGACCaguUGGAccaGGACC---UCCACUUGGa -3'
miRNA:   3'- -CCUGG---ACCU---CCUGGugaAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 23353 0.68 0.919024
Target:  5'- aGGACCUacAGGACCAgUUggACCUGGa -3'
miRNA:   3'- -CCUGGAccUCCUGGUgAAggUGGACU- -5'
31670 3' -56 NC_006883.1 + 27515 0.69 0.882379
Target:  5'- aGGACCUGauGGACCugUaggaCCugCUGGa -3'
miRNA:   3'- -CCUGGACcuCCUGGugAa---GGugGACU- -5'
31670 3' -56 NC_006883.1 + 211198 0.69 0.868481
Target:  5'- uGGAgcuuauCCUGGAGGACCACaagCC-UUUGAa -3'
miRNA:   3'- -CCU------GGACCUCCUGGUGaa-GGuGGACU- -5'
31670 3' -56 NC_006883.1 + 21809 0.7 0.861234
Target:  5'- aGGGCCaGcAGGACCAggaccgCCACCUGGa -3'
miRNA:   3'- -CCUGGaCcUCCUGGUgaa---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 27722 0.7 0.853796
Target:  5'- gGGACCUGucGGACCAgUaggaccugaUCCACCa-- -3'
miRNA:   3'- -CCUGGACcuCCUGGUgA---------AGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28519 0.7 0.838365
Target:  5'- uGGACCaguUGGAccagucGGACCAgUUCCACCn-- -3'
miRNA:   3'- -CCUGG---ACCU------CCUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 26554 0.71 0.813933
Target:  5'- aGGACCUGcuGGACCugUaggaCCugCUGGa -3'
miRNA:   3'- -CCUGGACcuCCUGGugAa---GGugGACU- -5'
31670 3' -56 NC_006883.1 + 22126 0.71 0.796868
Target:  5'- uGGACCaGcAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGaCcUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 222980 0.71 0.77925
Target:  5'- aGGACCaGGugaaccuuguGGACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGaCCu---------CCUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 23398 0.72 0.761144
Target:  5'- uGGugCUGGugguGGACCuggUCCugCUGGu -3'
miRNA:   3'- -CCugGACCu---CCUGGugaAGGugGACU- -5'
31670 3' -56 NC_006883.1 + 23919 0.72 0.761144
Target:  5'- uGGACCUGuAGGACCuGCUggaCCugUUGAu -3'
miRNA:   3'- -CCUGGACcUCCUGG-UGAa--GGugGACU- -5'
31670 3' -56 NC_006883.1 + 22209 0.72 0.755626
Target:  5'- nGACCUGGAGGACCAgcaggaccaggaCCACCa-- -3'
miRNA:   3'- cCUGGACCUCCUGGUgaa---------GGUGGacu -5'
31670 3' -56 NC_006883.1 + 28222 0.72 0.742613
Target:  5'- aGGACCaGucGGACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 24969 0.73 0.714166
Target:  5'- uGGACCUGauGGACCACUUggACCUGu -3'
miRNA:   3'- -CCUGGACcuCCUGGUGAAggUGGACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.