miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 5' -55.6 NC_006883.1 + 24959 0.66 0.950631
Target:  5'- gGACCAcUUGGACCuGUaGGACCuGg- -3'
miRNA:   3'- -CUGGUcAACCUGGuCAgCCUGGuCaa -5'
31670 5' -55.6 NC_006883.1 + 223072 0.67 0.937456
Target:  5'- gGACCAGgaGGACCuggaGGACCAa-- -3'
miRNA:   3'- -CUGGUCaaCCUGGucagCCUGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 22152 0.68 0.892267
Target:  5'- gGACCuGgaGGACCAGgugaaccacUUGGACCAGc- -3'
miRNA:   3'- -CUGGuCaaCCUGGUC---------AGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 24986 0.69 0.864343
Target:  5'- gGACCAcUUGGACCAcUUGGACCuGa- -3'
miRNA:   3'- -CUGGUcAACCUGGUcAGCCUGGuCaa -5'
31670 5' -55.6 NC_006883.1 + 28350 0.69 0.856846
Target:  5'- gGACCAGcaGGACCAGUuccgccUGGACCuGg- -3'
miRNA:   3'- -CUGGUCaaCCUGGUCA------GCCUGGuCaa -5'
31670 5' -55.6 NC_006883.1 + 210945 0.69 0.856846
Target:  5'- uGACCAGaaucuacaagUGGACCAGUUGG-CCAa-- -3'
miRNA:   3'- -CUGGUCa---------ACCUGGUCAGCCuGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 27496 0.7 0.841271
Target:  5'- gGACCuGcUGGACCuGUaGGACCAGg- -3'
miRNA:   3'- -CUGGuCaACCUGGuCAgCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21808 0.7 0.824965
Target:  5'- gGGCCAGcaGGACCAGgaccgccaccUGGACCAGa- -3'
miRNA:   3'- -CUGGUCaaCCUGGUCa---------GCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22209 0.71 0.799259
Target:  5'- gGACCuGgaGGACCAG-CaGGACCAGg- -3'
miRNA:   3'- -CUGGuCaaCCUGGUCaG-CCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 23700 0.72 0.744147
Target:  5'- gGACCAGaUGGACCuggaGGACCAGc- -3'
miRNA:   3'- -CUGGUCaACCUGGucagCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22098 0.72 0.734581
Target:  5'- gGACCuGgaGGACCAcUUGGACCAGg- -3'
miRNA:   3'- -CUGGuCaaCCUGGUcAGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21862 0.72 0.72493
Target:  5'- gGACCAGcaGGuCCAGUaGGACCAGg- -3'
miRNA:   3'- -CUGGUCaaCCuGGUCAgCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21978 0.72 0.705404
Target:  5'- gGACCAGgaGGACCugcaGGACCAGg- -3'
miRNA:   3'- -CUGGUCaaCCUGGucagCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22236 0.73 0.665706
Target:  5'- gGACCAGgaGGACCAcUUGGACCAu-- -3'
miRNA:   3'- -CUGGUCaaCCUGGUcAGCCUGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 23205 0.73 0.665706
Target:  5'- gGACCAGgaGGACCAcUUGGACCAu-- -3'
miRNA:   3'- -CUGGUCaaCCUGGUcAGCCUGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 222961 0.74 0.635628
Target:  5'- gGACCAGUUccaccagcaGGACCAG-CaGGACCAGg- -3'
miRNA:   3'- -CUGGUCAA---------CCUGGUCaG-CCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21727 0.74 0.625586
Target:  5'- gGACCAGcaGGACCAGUaGGACCAc-- -3'
miRNA:   3'- -CUGGUCaaCCUGGUCAgCCUGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 27728 0.76 0.507365
Target:  5'- -uCCuGUgGGACCuGUCGGACCAGUa -3'
miRNA:   3'- cuGGuCAaCCUGGuCAGCCUGGUCAa -5'
31670 5' -55.6 NC_006883.1 + 23150 0.76 0.507365
Target:  5'- cACCAGcaGGACCAGUUGGACCuGg- -3'
miRNA:   3'- cUGGUCaaCCUGGUCAGCCUGGuCaa -5'
31670 5' -55.6 NC_006883.1 + 23252 0.76 0.507365
Target:  5'- cACCAGcaGGACCAGUUGGACCuGg- -3'
miRNA:   3'- cUGGUCaaCCUGGUCAGCCUGGuCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.