miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 3' -54.5 NC_006883.1 + 23671 0.66 0.984677
Target:  5'- uGGUCCAacUGGUCCgACuGGUUCuGCu -3'
miRNA:   3'- -CCAGGUcuGCCAGGaUGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 28105 0.66 0.980906
Target:  5'- aGGaCCAGuuGGaCCUGgAGGaCCAGCa -3'
miRNA:   3'- -CCaGGUCugCCaGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21744 0.66 0.980906
Target:  5'- -uUCCAGuuGGaCCUGgAGGaCCAGCa -3'
miRNA:   3'- ccAGGUCugCCaGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 28138 0.67 0.976481
Target:  5'- uGGUCCuccaGGUCCUcCAGGUUCu-- -3'
miRNA:   3'- -CCAGGucugCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21979 0.67 0.974006
Target:  5'- uGGaCCAGGaGGaCCUGCAGGaCCAGg -3'
miRNA:   3'- -CCaGGUCUgCCaGGAUGUCCaGGUUg -5'
31677 3' -54.5 NC_006883.1 + 216981 0.67 0.971348
Target:  5'- aGGUCagauacuGACGGUCCUuuccCAGGaaCGGCa -3'
miRNA:   3'- -CCAGgu-----CUGCCAGGAu---GUCCagGUUG- -5'
31677 3' -54.5 NC_006883.1 + 222713 0.67 0.965454
Target:  5'- aGGUUCAccUGGUCCUGCuGGUUCGc- -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUGuCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 26779 0.68 0.958757
Target:  5'- aGGaCCAGuuGGaCCUGCAGGaCCAGu -3'
miRNA:   3'- -CCaGGUCugCCaGGAUGUCCaGGUUg -5'
31677 3' -54.5 NC_006883.1 + 21871 0.69 0.933511
Target:  5'- aGGaCCAGA-GGaCCaGCAGGUCCAGu -3'
miRNA:   3'- -CCaGGUCUgCCaGGaUGUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 111975 0.69 0.928524
Target:  5'- uGGUCCAGgugguaaacACGGUggUAgGGGUCCAGg -3'
miRNA:   3'- -CCAGGUC---------UGCCAggAUgUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 26707 0.69 0.928524
Target:  5'- aGGUCCuGcUGGUUCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21929 0.71 0.866439
Target:  5'- uGGUCC---UGGUCCUGCuGGUCCu-- -3'
miRNA:   3'- -CCAGGucuGCCAGGAUGuCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21961 0.71 0.859069
Target:  5'- uGGUCCAagUGGUCCUcCuGGUCCuGCu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAuGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 27437 0.71 0.859069
Target:  5'- uGGU--GGAUcaGGUCCUACuGGUCCGACn -3'
miRNA:   3'- -CCAggUCUG--CCAGGAUGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 24703 0.71 0.851505
Target:  5'- uGGUCCAucaGGUCCaAguGGUCCAAg -3'
miRNA:   3'- -CCAGGUcugCCAGGaUguCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 222659 0.72 0.835819
Target:  5'- uGGUCCuacuGGuucuccUGGUCCUGCuGGUCCuGCu -3'
miRNA:   3'- -CCAGGu---CU------GCCAGGAUGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 28366 0.72 0.82771
Target:  5'- --aCCAGGaGGUCCUGgAGGaCCAGCa -3'
miRNA:   3'- ccaGGUCUgCCAGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 222749 0.72 0.82771
Target:  5'- uGGUCCuguuGGAaauccUGGUCCUACuGGUCCuuCu -3'
miRNA:   3'- -CCAGG----UCU-----GCCAGGAUGuCCAGGuuG- -5'
31677 3' -54.5 NC_006883.1 + 21497 0.72 0.82771
Target:  5'- uGGUCCuucUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGucuGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 22877 0.72 0.810995
Target:  5'- aGGUCCAacUGGUCCUGCuggugcuccAGGUUUAACu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUG---------UCCAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.