miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 5' -60 NC_006883.1 + 26340 0.66 0.866645
Target:  5'- aUGGUgcaacaGGUCCaaCuGGUCCUgCUGGUc -3'
miRNA:   3'- gACCA------CCAGGagGuCCAGGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 175090 0.66 0.866645
Target:  5'- gUGGUaagggugauaaaGGUCCUuuGGGUCCUguuaUUGGUa -3'
miRNA:   3'- gACCA------------CCAGGAggUCCAGGAg---GACCA- -5'
31677 5' -60 NC_006883.1 + 40036 0.66 0.866645
Target:  5'- aUGGUGGaCag-CAuGGUUCUCCUGGUg -3'
miRNA:   3'- gACCACCaGgagGU-CCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 21767 0.66 0.844625
Target:  5'- -gGGUccagacGGUCCUaCAGGUCCaaCUGGUc -3'
miRNA:   3'- gaCCA------CCAGGAgGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 23090 0.66 0.844625
Target:  5'- cCUGuaGGUCCuucaaaUCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACcaCCAGG------AGGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 27948 0.66 0.829074
Target:  5'- gUGGaacUGGUCCgacuGGUCCUgCUGGUc -3'
miRNA:   3'- gACC---ACCAGGagguCCAGGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 23644 0.66 0.829074
Target:  5'- -aGGUccagcaGGUCCUaCAGGUCCaaCUGGUc -3'
miRNA:   3'- gaCCA------CCAGGAgGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 232232 0.67 0.812884
Target:  5'- uCUGGUGugaGUCagaCAGGUCCUaCUGGUa -3'
miRNA:   3'- -GACCAC---CAGgagGUCCAGGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 23427 0.67 0.812884
Target:  5'- cCUGGUGGaCCUgUAGGaCCaUCUGGUc -3'
miRNA:   3'- -GACCACCaGGAgGUCCaGGaGGACCA- -5'
31677 5' -60 NC_006883.1 + 27480 0.67 0.804565
Target:  5'- aCUGGUcccacaGGUCCaaCuGGUCCUgCUGGa -3'
miRNA:   3'- -GACCA------CCAGGagGuCCAGGAgGACCa -5'
31677 5' -60 NC_006883.1 + 23144 0.67 0.778801
Target:  5'- aCUGGaccagaUGGUCCUaCAGGUCCaCCaGGUc -3'
miRNA:   3'- -GACC------ACCAGGAgGUCCAGGaGGaCCA- -5'
31677 5' -60 NC_006883.1 + 21939 0.68 0.761027
Target:  5'- cCUGcUGGUCCUCCAGGUCagauggUCCa--- -3'
miRNA:   3'- -GACcACCAGGAGGUCCAGg-----AGGacca -5'
31677 5' -60 NC_006883.1 + 184811 0.68 0.761027
Target:  5'- ----aGGUUCaacaauaccauaUUCAGGUCCUCCUGGUu -3'
miRNA:   3'- gaccaCCAGG------------AGGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 222702 0.68 0.74651
Target:  5'- aCUGGUccacaagguucaccuGGUCCUgCuGGUUCgCCUGGUg -3'
miRNA:   3'- -GACCA---------------CCAGGAgGuCCAGGaGGACCA- -5'
31677 5' -60 NC_006883.1 + 22884 0.68 0.733618
Target:  5'- aCUGGUccugcuGGUgCUCCAGGUuuaacuggaCCUgCUGGUc -3'
miRNA:   3'- -GACCA------CCAgGAGGUCCA---------GGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 27895 0.68 0.733618
Target:  5'- gUGGaacUGGUCCaaCuGGUCCUgCUGGUg -3'
miRNA:   3'- gACC---ACCAGGagGuCCAGGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 21867 0.7 0.642176
Target:  5'- gCUGGUccaagugguucaccuGGUCCUCCAGGUCCUa----- -3'
miRNA:   3'- -GACCA---------------CCAGGAGGUCCAGGAggacca -5'
31677 5' -60 NC_006883.1 + 27201 0.7 0.638307
Target:  5'- --aGUGGUCCgcaAGGUgCUCCUGGUc -3'
miRNA:   3'- gacCACCAGGaggUCCAgGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 21730 0.7 0.628634
Target:  5'- gUGGaGGUCCuggUCCAacuGGUCCUgCUGGUc -3'
miRNA:   3'- gACCaCCAGG---AGGU---CCAGGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 23038 0.7 0.628634
Target:  5'- -cGGUGGUCCaaCuGGUCCUCaaGGUn -3'
miRNA:   3'- gaCCACCAGGagGuCCAGGAGgaCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.