miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 3' -56.4 NC_006883.1 + 27938 0.66 0.969069
Target:  5'- uGGUgCUauGGUGGaacUGGUCCgaCuGGUCCu -3'
miRNA:   3'- -CCAgGA--UCACC---ACCAGGagGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 23028 0.66 0.962977
Target:  5'- -cUCCaGGUaucGGUGGUCCaaCuGGUCCu -3'
miRNA:   3'- ccAGGaUCA---CCACCAGGagGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27392 0.66 0.962977
Target:  5'- -----------aGGUCCUCCAGGUCCu -3'
miRNA:   3'- ccaggaucaccaCCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 211106 0.66 0.956096
Target:  5'- uGG-CUUGGUGGUGGUaagaaaaCUCCAaauuGG-CCa -3'
miRNA:   3'- -CCaGGAUCACCACCAg------GAGGU----CCaGG- -5'
31678 3' -56.4 NC_006883.1 + 23644 0.68 0.920146
Target:  5'- aGGUCC-AGca--GGUCCUaCAGGUCCa -3'
miRNA:   3'- -CCAGGaUCaccaCCAGGAgGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222731 0.68 0.914678
Target:  5'- uGGUucgCCUGGUGcaacUGGUCCuguuggaaaUCCuGGUCCu -3'
miRNA:   3'- -CCA---GGAUCACc---ACCAGG---------AGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 175079 0.68 0.908994
Target:  5'- --aCCUagacuaGGUGGUaagggugauaaaGGUCCUuuGGGUCCu -3'
miRNA:   3'- ccaGGA------UCACCA------------CCAGGAggUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21860 0.69 0.890662
Target:  5'- uGGUCCUGcUGGUccaaguGGUUCaCCuGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGaGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 111888 0.69 0.890662
Target:  5'- uGGagCUGGUGGaGGUaCUCCAGGUa- -3'
miRNA:   3'- -CCagGAUCACCaCCAgGAGGUCCAgg -5'
31678 3' -56.4 NC_006883.1 + 211333 0.69 0.884134
Target:  5'- aGGaUCUUggAGUGGUGGUCCUagaguagcaCCAGGa-- -3'
miRNA:   3'- -CC-AGGA--UCACCACCAGGA---------GGUCCagg -5'
31678 3' -56.4 NC_006883.1 + 22886 0.69 0.884134
Target:  5'- uGGUCCUGcUGGUG---CUCCAGGUUUa -3'
miRNA:   3'- -CCAGGAUcACCACcagGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 26278 0.7 0.856028
Target:  5'- aGGUCCUAca---GGUCCagCAGGUCCu -3'
miRNA:   3'- -CCAGGAUcaccaCCAGGagGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21130 0.7 0.848527
Target:  5'- gGGuUCCUguuGGUGGUGGauuaaUUCCAGGUgCg -3'
miRNA:   3'- -CC-AGGA---UCACCACCag---GAGGUCCAgG- -5'
31678 3' -56.4 NC_006883.1 + 27446 0.7 0.843941
Target:  5'- aGGUCCUAcUGGUccgacaGGUCCcacaggaccaacuggUCCcacAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGG---------------AGG---UCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 23086 0.71 0.782631
Target:  5'- uGGUCCU-GUa--GGUCCuucaaaUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAuCAccaCCAGG------AGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222686 0.71 0.764778
Target:  5'- uGGUCCUgcuGGUGGaacUGGUCCacaagguucaCCuGGUCCu -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGa---------GGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 26359 0.72 0.737214
Target:  5'- uGGUCCUgcuggucccacaGGUGGaacUGGUCCaaCuGGUCCa -3'
miRNA:   3'- -CCAGGA------------UCACC---ACCAGGagGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 23155 0.73 0.699333
Target:  5'- uGGUCCUAca---GGUCCaCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcaccaCCAGGaGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21524 0.74 0.64112
Target:  5'- uGGUCCaGGUGGcGGUCCU---GGUCCu -3'
miRNA:   3'- -CCAGGaUCACCaCCAGGAgguCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21722 0.74 0.631353
Target:  5'- uGGUCCaAGUGGaGGUCCU---GGUCCa -3'
miRNA:   3'- -CCAGGaUCACCaCCAGGAgguCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.