miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 5' -59.6 NC_006883.1 + 159176 0.66 0.863748
Target:  5'- aUGuUCCUGCUGGauuuucUCCUgCAGGaUCUAa -3'
miRNA:   3'- gACcAGGACGACC------AGGAgGUCC-AGGU- -5'
31678 5' -59.6 NC_006883.1 + 27909 0.66 0.856473
Target:  5'- aCUGGUCCUGCUGGUgCUgaCGGa---- -3'
miRNA:   3'- -GACCAGGACGACCAgGAg-GUCcaggu -5'
31678 5' -59.6 NC_006883.1 + 23693 0.66 0.856473
Target:  5'- aUGGaCCUGgaGGaCCagcaggaCCAGGUCCAc -3'
miRNA:   3'- gACCaGGACgaCCaGGa------GGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 222813 0.67 0.8256
Target:  5'- cCUGGUCCUGCUGGUgguggaaCGGGUg-- -3'
miRNA:   3'- -GACCAGGACGACCAggag---GUCCAggu -5'
31678 5' -59.6 NC_006883.1 + 28360 0.67 0.817468
Target:  5'- -aGGUCCUGgaGGaCCagCAGGaCCAg -3'
miRNA:   3'- gaCCAGGACgaCCaGGagGUCCaGGU- -5'
31678 5' -59.6 NC_006883.1 + 28007 0.67 0.809184
Target:  5'- aCUGGUCCagGCggaacUGGUCCaaCuGGUCCu -3'
miRNA:   3'- -GACCAGGa-CG-----ACCAGGagGuCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 211478 0.68 0.774672
Target:  5'- -aGG-CUUG-UGGUCCUCCAGGauaagcUCCAu -3'
miRNA:   3'- gaCCaGGACgACCAGGAGGUCC------AGGU- -5'
31678 5' -59.6 NC_006883.1 + 39893 0.68 0.756694
Target:  5'- aUGGUgCUGCUGGUgUUCCuGGaucaCCAa -3'
miRNA:   3'- gACCAgGACGACCAgGAGGuCCa---GGU- -5'
31678 5' -59.6 NC_006883.1 + 27497 0.68 0.756694
Target:  5'- -aGGaCCUGCUGGaCCUgUAGGaCCAg -3'
miRNA:   3'- gaCCaGGACGACCaGGAgGUCCaGGU- -5'
31678 5' -59.6 NC_006883.1 + 28124 0.68 0.756694
Target:  5'- uUGGaCCUGUaGGUCCUgUAGGaCCAg -3'
miRNA:   3'- gACCaGGACGaCCAGGAgGUCCaGGU- -5'
31678 5' -59.6 NC_006883.1 + 27846 0.69 0.719611
Target:  5'- aCUGGUCCUaCaGGaCCUaCAGGUCCAn -3'
miRNA:   3'- -GACCAGGAcGaCCaGGAgGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 23117 0.7 0.632961
Target:  5'- aCUGGUCCcacaGGUCC-CaCAGGUCCAa -3'
miRNA:   3'- -GACCAGGacgaCCAGGaG-GUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 24694 0.71 0.603806
Target:  5'- -aGGUCCaagUGGUCCaUCAGGUCCAa -3'
miRNA:   3'- gaCCAGGacgACCAGGaGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 26413 0.71 0.574821
Target:  5'- -aGGUCCagGUgguggaacUGGUaCUCCAGGUCCAg -3'
miRNA:   3'- gaCCAGGa-CG--------ACCAgGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 21585 0.71 0.555672
Target:  5'- cCUGGUCCUaCUGGaCCUgCuGGUCCu -3'
miRNA:   3'- -GACCAGGAcGACCaGGAgGuCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 28164 0.72 0.49952
Target:  5'- aUGGUUCUGauggaggaagUGGUCCUCCAGGaCCu -3'
miRNA:   3'- gACCAGGACg---------ACCAGGAGGUCCaGGu -5'
31678 5' -59.6 NC_006883.1 + 189407 0.73 0.463514
Target:  5'- aCUGGUUCaGUUGGUUCUUCGGGUgCAg -3'
miRNA:   3'- -GACCAGGaCGACCAGGAGGUCCAgGU- -5'
31678 5' -59.6 NC_006883.1 + 21859 0.74 0.420504
Target:  5'- aUGGUCCUGCUGGUCCaa-GuGGUUCAn -3'
miRNA:   3'- gACCAGGACGACCAGGaggU-CCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 27446 0.75 0.395885
Target:  5'- -aGGUCCUaCUGGUCCgaCAGGUCCc -3'
miRNA:   3'- gaCCAGGAcGACCAGGagGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 222684 0.75 0.36454
Target:  5'- gCUGGUCCUGCUGGUggaaCuGGUCCAc -3'
miRNA:   3'- -GACCAGGACGACCAggagGuCCAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.