miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 3' -53.9 NC_006883.1 + 188568 0.66 0.990587
Target:  5'- uGCUGGUgCUGuaagagcaGUgCC-AGUGGUCCc -3'
miRNA:   3'- -CGACCAgGACuac-----CA-GGuUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 192088 0.66 0.990587
Target:  5'- uGCuUGG-CCUGcUGGUgUAGGUGGUa- -3'
miRNA:   3'- -CG-ACCaGGACuACCAgGUUCACCAgg -5'
31679 3' -53.9 NC_006883.1 + 27917 0.66 0.990587
Target:  5'- uGCUGGUgCUGAcggaagugaUGGUgCuauGGUggaacuGGUCCg -3'
miRNA:   3'- -CGACCAgGACU---------ACCAgGu--UCA------CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 112315 0.66 0.987953
Target:  5'- aCUGGUggaUCUGGUGGUgCuacuGGUGGaUCUg -3'
miRNA:   3'- cGACCA---GGACUACCAgGu---UCACC-AGG- -5'
31679 3' -53.9 NC_006883.1 + 26800 0.66 0.986439
Target:  5'- aGUUGGaCCUGGUGGaCCAGcaGGaCCa -3'
miRNA:   3'- -CGACCaGGACUACCaGGUUcaCCaGG- -5'
31679 3' -53.9 NC_006883.1 + 23396 0.66 0.984782
Target:  5'- uCUGGUgCUGGUGGUggaCC---UGGUCCn -3'
miRNA:   3'- cGACCAgGACUACCA---GGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26572 0.66 0.984782
Target:  5'- uGCUGGUCUaGAuauUGGaacuucagcUCCAucUGGUCCu -3'
miRNA:   3'- -CGACCAGGaCU---ACC---------AGGUucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 22884 0.66 0.984782
Target:  5'- aCUGGUCCUGcUGGugcUCCAGGUuuaacuGGaCCn -3'
miRNA:   3'- cGACCAGGACuACC---AGGUUCA------CCaGG- -5'
31679 3' -53.9 NC_006883.1 + 110893 0.67 0.981818
Target:  5'- uGCUuaUCgUGGUGGuggcacaauuauagaUCCAAGUGGUUCu -3'
miRNA:   3'- -CGAccAGgACUACC---------------AGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27752 0.67 0.981013
Target:  5'- aGUUGGaCCUG-UGGgaCCAGuUGGUCCu -3'
miRNA:   3'- -CGACCaGGACuACCa-GGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 111238 0.67 0.976586
Target:  5'- uGUUGGUCCUGAuccUGGUUUAAGacuaucUGGauaaCCa -3'
miRNA:   3'- -CGACCAGGACU---ACCAGGUUC------ACCa---GG- -5'
31679 3' -53.9 NC_006883.1 + 47715 0.67 0.974108
Target:  5'- uCUGGUaCUGGuauugggucaaaUGGUUUAGGUGGUUCu -3'
miRNA:   3'- cGACCAgGACU------------ACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 31587 0.67 0.974108
Target:  5'- aGCUGGUCCUGcUGGUggaUUAAGUgcuGGUa- -3'
miRNA:   3'- -CGACCAGGACuACCA---GGUUCA---CCAgg -5'
31679 3' -53.9 NC_006883.1 + 23095 0.67 0.974108
Target:  5'- --aGGUCCUucaaauccaGGUCCAAcUGGUCCc -3'
miRNA:   3'- cgaCCAGGAcua------CCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28109 0.68 0.971445
Target:  5'- cCUGGUgCUGAcggugaugaUGGgggAAGUGGUCCu -3'
miRNA:   3'- cGACCAgGACU---------ACCaggUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28270 0.68 0.968591
Target:  5'- --aGGUCCUucaGGUGG---AAGUGGUCCu -3'
miRNA:   3'- cgaCCAGGA---CUACCaggUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 22993 0.68 0.965539
Target:  5'- uGCUGGUgaUGAUGGUgCUcc-UGGUCCu -3'
miRNA:   3'- -CGACCAggACUACCA-GGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 134586 0.69 0.951257
Target:  5'- aCUGGUUCUGGUGGUgUAGGUGcaaCa -3'
miRNA:   3'- cGACCAGGACUACCAgGUUCACcagG- -5'
31679 3' -53.9 NC_006883.1 + 26707 0.69 0.947147
Target:  5'- --aGGUCCUGcUGGUUCuccaGGUCCu -3'
miRNA:   3'- cgaCCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23433 0.69 0.946724
Target:  5'- cCUGGaCCUGGUGGaCCuguAGgaccaucUGGUCCa -3'
miRNA:   3'- cGACCaGGACUACCaGGu--UC-------ACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.