miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 5' -59.8 NC_006883.1 + 211483 0.66 0.863748
Target:  5'- ---uUCaaagGCUuGUGGUCCUCCAGGa -3'
miRNA:   3'- gaccAGga--CGAcCACCAGGAGGUCCa -5'
31679 5' -59.8 NC_006883.1 + 186846 0.66 0.856473
Target:  5'- uCUGGuaUCUcaggUGCaGGUGGUUCUCCAGu- -3'
miRNA:   3'- -GACC--AGG----ACGaCCACCAGGAGGUCca -5'
31679 5' -59.8 NC_006883.1 + 194109 0.67 0.817468
Target:  5'- gUGGUgCUGCUGGUGGagUgggaaCAGGa -3'
miRNA:   3'- gACCAgGACGACCACCagGag---GUCCa -5'
31679 5' -59.8 NC_006883.1 + 173025 0.67 0.783491
Target:  5'- gUGGUaCUGCUGGUGcUUCUUUAGGa -3'
miRNA:   3'- gACCAgGACGACCACcAGGAGGUCCa -5'
31679 5' -59.8 NC_006883.1 + 111884 0.68 0.765737
Target:  5'- aUGGUggaGCUGGUGGagguaCUCCAGGUa -3'
miRNA:   3'- gACCAggaCGACCACCag---GAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 26268 0.69 0.704446
Target:  5'- aUGGUCCaGCaGGUccuacagguccagcaGGUCCUCCuGGa -3'
miRNA:   3'- gACCAGGaCGaCCA---------------CCAGGAGGuCCa -5'
31679 5' -59.8 NC_006883.1 + 27909 0.69 0.675656
Target:  5'- aCUGGUCCUGCUGGUgcugacggaagugauGGUgCUau-GGUg -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAgGAgguCCA- -5'
31679 5' -59.8 NC_006883.1 + 220485 0.69 0.671791
Target:  5'- gUGGUgUUGCUGGUGGUaaUUgGGGUg -3'
miRNA:   3'- gACCAgGACGACCACCAggAGgUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21977 0.71 0.594117
Target:  5'- cCUGGUCCUGCUGGaucugcUGGUgcgauaCCUgCuGGUg -3'
miRNA:   3'- -GACCAGGACGACC------ACCA------GGAgGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 31588 0.71 0.555672
Target:  5'- gCUGGUCCUGCUGGUGGaUUaagUgCuGGUa -3'
miRNA:   3'- -GACCAGGACGACCACC-AGg--AgGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 26357 0.71 0.546166
Target:  5'- aCUGGUCCUGC---UGGUCC-CaCAGGUg -3'
miRNA:   3'- -GACCAGGACGaccACCAGGaG-GUCCA- -5'
31679 5' -59.8 NC_006883.1 + 28109 0.72 0.517984
Target:  5'- cCUGGUgCUGacggugaugaUGGgggaagUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAgGACg---------ACC------ACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 27866 0.72 0.517984
Target:  5'- -aGGUCCaaCUGGUccaacuGGUCCUUCAGGUg -3'
miRNA:   3'- gaCCAGGacGACCA------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 27355 0.73 0.449495
Target:  5'- aUGGUUCUGaugguggaaCUGGUacuccagguccagcaGGUCCUCCAGGUc -3'
miRNA:   3'- gACCAGGAC---------GACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21128 0.73 0.446027
Target:  5'- uUGGguUCCUGUUGGUGGUggauuaaUUCCAGGUg -3'
miRNA:   3'- gACC--AGGACGACCACCAg------GAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 28201 0.74 0.428914
Target:  5'- -aGGUCCUaCUGGUggagauGGUCCUCCuGGUc -3'
miRNA:   3'- gaCCAGGAcGACCA------CCAGGAGGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 23441 0.74 0.403988
Target:  5'- uCUGGUCCaGCa---GGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGaCGaccaCCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21898 0.74 0.387887
Target:  5'- ---nUCCUagUGGUGGUCCUCCAGGUc -3'
miRNA:   3'- gaccAGGAcgACCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21495 0.75 0.36454
Target:  5'- aCUGGUCCUuCUGGUccuccaGGUCCuucuggUCCAGGUg -3'
miRNA:   3'- -GACCAGGAcGACCA------CCAGG------AGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21540 0.76 0.330671
Target:  5'- cCUGGUCCUGCUGGcccucaaggugauguUGGUCCgagugguggUCCuGGUc -3'
miRNA:   3'- -GACCAGGACGACC---------------ACCAGG---------AGGuCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.