miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 3' -49.7 NC_006883.1 + 194335 0.66 0.999781
Target:  5'- uGCUGGUgCUGUAaucaaacaaaauGGUCCUagAaaagcacaacuacccAAUCCa -3'
miRNA:   3'- -UGACCAgGACAU------------CCAGGAagU---------------UUAGG- -5'
31680 3' -49.7 NC_006883.1 + 175090 0.66 0.99976
Target:  5'- -gUGGUaaggGUgauaaAGGUCCUUUggGUCCu -3'
miRNA:   3'- ugACCAgga-CA-----UCCAGGAAGuuUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21567 0.66 0.999621
Target:  5'- gUUGGUCCgagugGU-GGUCCU---GGUCCu -3'
miRNA:   3'- uGACCAGGa----CAuCCAGGAaguUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21969 0.67 0.999283
Target:  5'- -gUGGUCCUccuGGUCCUgcuGGAUCUg -3'
miRNA:   3'- ugACCAGGAcauCCAGGAag-UUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26545 0.67 0.998713
Target:  5'- aACUGGUCCUGcuGGUCCc-CAAGg-- -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaGUUUagg -5'
31680 3' -49.7 NC_006883.1 + 26548 0.68 0.997794
Target:  5'- uGCUGGaCCUGUAGGaCCUgcuGGaCCa -3'
miRNA:   3'- -UGACCaGGACAUCCaGGAaguUUaGG- -5'
31680 3' -49.7 NC_006883.1 + 22883 0.69 0.993419
Target:  5'- aACUGGUCCUGcuGGUgCUcCAGGUUUa -3'
miRNA:   3'- -UGACCAGGACauCCAgGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27479 0.7 0.990118
Target:  5'- aACUGGUCCcacAGGUCCaacuGGUCCu -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaguUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27257 0.7 0.990118
Target:  5'- --aGGUCCUacagGUGgagauGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugaCCAGGA----CAU-----CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21659 0.7 0.987278
Target:  5'- uGCUGGUCCaacAGGUCCaacuGGUCCu -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaguUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28182 0.7 0.987278
Target:  5'- -gUGGUCCUccAGGaCCUcCAGGUCCu -3'
miRNA:   3'- ugACCAGGAcaUCCaGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 222683 0.71 0.985296
Target:  5'- uGCUGGUCCUGcugguggaacuGGUCCacaaggUUCAccuGGUCCu -3'
miRNA:   3'- -UGACCAGGACau---------CCAGG------AAGU---UUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27452 0.71 0.983848
Target:  5'- uACUGGUCCgacAGGUCCcaCAGGaCCa -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaGUUUaGG- -5'
31680 3' -49.7 NC_006883.1 + 26428 0.71 0.977447
Target:  5'- aACUGGUaCUccAGGUCCagCAGGUCCu -3'
miRNA:   3'- -UGACCAgGAcaUCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26356 0.72 0.974946
Target:  5'- aACUGGUCCUGcuGGUCCcaCAGGUg- -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaGUUUAgg -5'
31680 3' -49.7 NC_006883.1 + 189408 0.72 0.972249
Target:  5'- aACUGGUUCaGUuGGUUCUUCGGGUgCa -3'
miRNA:   3'- -UGACCAGGaCAuCCAGGAAGUUUAgG- -5'
31680 3' -49.7 NC_006883.1 + 26707 0.72 0.966237
Target:  5'- --aGGUCCUGcuGGUUCUcCAGGUCCu -3'
miRNA:   3'- ugaCCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 24691 0.72 0.966237
Target:  5'- uACaGGUCCaaguGGUCCaUCAGGUCCa -3'
miRNA:   3'- -UGaCCAGGacauCCAGGaAGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23427 0.72 0.962911
Target:  5'- cCUGGUggaCCUGUAGGaCCaUCuGGUCCa -3'
miRNA:   3'- uGACCA---GGACAUCCaGGaAGuUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23012 0.73 0.959362
Target:  5'- cCUGGUCCUcaAGGUCCUcCAGGUa- -3'
miRNA:   3'- uGACCAGGAcaUCCAGGAaGUUUAgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.