miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 5' -59.4 NC_006883.1 + 222796 0.74 0.427546
Target:  5'- uUGGUCCUcCAGGUCCUcCuGGUCCu -3'
miRNA:   3'- gACCAGGGuGUCCAGGGuGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 222765 0.77 0.313122
Target:  5'- cCUGGUCCUACuGGUCCUucuGguGGUCCu -3'
miRNA:   3'- -GACCAGGGUGuCCAGGG---UguCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 222675 0.76 0.326951
Target:  5'- cCUGGUCCUGCuGGUCCUGCugguggaacuGGUCCAc -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGUGu---------CCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 222648 0.78 0.256399
Target:  5'- aCUGGUCCUGCuGGUCCUACuGGUUCu -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 73403 0.66 0.868742
Target:  5'- aCUGuccGUCCCA-AGGUUUCugauCAGGUCCAc -3'
miRNA:   3'- -GAC---CAGGGUgUCCAGGGu---GUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 28287 0.66 0.854311
Target:  5'- gUGGUCCUcCAGGUCCaC-CAGGaacUUCAg -3'
miRNA:   3'- gACCAGGGuGUCCAGG-GuGUCC---AGGU- -5'
31680 5' -59.4 NC_006883.1 + 28250 0.77 0.293217
Target:  5'- aCUGGUCCaACuGGUCCaACAGGUCCu -3'
miRNA:   3'- -GACCAGGgUGuCCAGGgUGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 28218 0.66 0.854311
Target:  5'- aUGGUCCUcCuGGUCCagguggaACuGGUCCg -3'
miRNA:   3'- gACCAGGGuGuCCAGGg------UGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 28182 0.72 0.525516
Target:  5'- gUGGUCCUcCAGGaCCUcCAGGUCCu -3'
miRNA:   3'- gACCAGGGuGUCCaGGGuGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 28137 0.76 0.348534
Target:  5'- gUGGUCCUcCAGGUCCUcCAGGUUCu -3'
miRNA:   3'- gACCAGGGuGUCCAGGGuGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 28082 0.74 0.436015
Target:  5'- aCUGGUCCUGCuGGUCCUcCAGGaCCu -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGuGUCCaGGu -5'
31680 5' -59.4 NC_006883.1 + 28050 0.84 0.116705
Target:  5'- aUGGUCCUcCAGGUCCUcCAGGUCCAg -3'
miRNA:   3'- gACCAGGGuGUCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 28022 0.68 0.772318
Target:  5'- aCUGGUCCaACuGGUCCUACuGGUg-- -3'
miRNA:   3'- -GACCAGGgUGuCCAGGGUGuCCAggu -5'
31680 5' -59.4 NC_006883.1 + 27990 0.77 0.286805
Target:  5'- aUGGUCCUcCAGGUCCaACuGGUCCAg -3'
miRNA:   3'- gACCAGGGuGUCCAGGgUGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27953 0.8 0.213301
Target:  5'- aCUGGUCCgACuGGUCCUGCuGGUCCu -3'
miRNA:   3'- -GACCAGGgUGuCCAGGGUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 27873 0.71 0.611402
Target:  5'- aCUGGUCCaACuGGUCCUucagguggaACuGGUCCAa -3'
miRNA:   3'- -GACCAGGgUGuCCAGGG---------UGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27846 0.92 0.031822
Target:  5'- aCUGGUCCUACAGGaCCUACAGGUCCAa -3'
miRNA:   3'- -GACCAGGGUGUCCaGGGUGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27821 0.79 0.223455
Target:  5'- -aGGUCCUGCuGGUCCUcCAGGUCCAn -3'
miRNA:   3'- gaCCAGGGUGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27480 0.88 0.060606
Target:  5'- aCUGGUCCCACAGGUCCaACuGGUCCu -3'
miRNA:   3'- -GACCAGGGUGUCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 27453 0.93 0.030212
Target:  5'- aCUGGUCCgACAGGUCCCACAGGaCCAa -3'
miRNA:   3'- -GACCAGGgUGUCCAGGGUGUCCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.