miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31681 3' -58.2 NC_006883.1 + 28133 0.66 0.925542
Target:  5'- -uUGGaccaguUGGACCUguaGGUCCUGUaGGaCCa -3'
miRNA:   3'- ccACC------ACCUGGA---CCAGGACGaCCaGG- -5'
31681 3' -58.2 NC_006883.1 + 193981 0.66 0.920342
Target:  5'- --aGGUGGAauuguuggUGGUgCUGCUGGUgCu -3'
miRNA:   3'- ccaCCACCUgg------ACCAgGACGACCAgG- -5'
31681 3' -58.2 NC_006883.1 + 27481 0.66 0.920342
Target:  5'- -cUGGUcccacaGGuccaaCUGGUCCUGCUGGagCa -3'
miRNA:   3'- ccACCA------CCug---GACCAGGACGACCagG- -5'
31681 3' -58.2 NC_006883.1 + 39358 0.66 0.914928
Target:  5'- aGUGGUGGAauauaUGGUgCUGgUGGUa- -3'
miRNA:   3'- cCACCACCUgg---ACCAgGACgACCAgg -5'
31681 3' -58.2 NC_006883.1 + 23077 0.66 0.909302
Target:  5'- --aGGUccaaCUGGUCCUGUaGGUCCu -3'
miRNA:   3'- ccaCCAccugGACCAGGACGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 181460 0.67 0.903464
Target:  5'- cGGUGGUagcguuGGugCUG---CUGCUGGUUCu -3'
miRNA:   3'- -CCACCA------CCugGACcagGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27510 0.67 0.891164
Target:  5'- -cUGaUGGACCUguaGGaCCUGCUGGaCCu -3'
miRNA:   3'- ccACcACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 112337 0.67 0.891164
Target:  5'- -cUGGUGGAUCUGGUaauaCUaCUGGUa- -3'
miRNA:   3'- ccACCACCUGGACCAg---GAcGACCAgg -5'
31681 3' -58.2 NC_006883.1 + 15535 0.67 0.891164
Target:  5'- aGUGGUGGAUCUGGUUauaaUGCaGcaCCu -3'
miRNA:   3'- cCACCACCUGGACCAGg---ACGaCcaGG- -5'
31681 3' -58.2 NC_006883.1 + 23929 0.67 0.884706
Target:  5'- -uUGGaccaguUGGACCUguaGGaCCUGCUGGaCCu -3'
miRNA:   3'- ccACC------ACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 22978 0.67 0.884706
Target:  5'- --aGGUccaaCUGGUCCUGCUGGUg- -3'
miRNA:   3'- ccaCCAccugGACCAGGACGACCAgg -5'
31681 3' -58.2 NC_006883.1 + 26681 0.67 0.884706
Target:  5'- aGUGaucaGUGGguaucaguuucACaaGGUCCUGCUGGUUCu -3'
miRNA:   3'- cCAC----CACC-----------UGgaCCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 194091 0.67 0.878048
Target:  5'- -aUGGUGGAgCaaugguuggUGGUgCUGCUGGUg- -3'
miRNA:   3'- ccACCACCUgG---------ACCAgGACGACCAgg -5'
31681 3' -58.2 NC_006883.1 + 27815 0.68 0.864148
Target:  5'- ------aGAUUUaGGUCCUGCUGGUCCu -3'
miRNA:   3'- ccaccacCUGGA-CCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26557 0.68 0.856914
Target:  5'- aGGaGGaccugcUGGACCUguaGGaCCUGCUGGaCCa -3'
miRNA:   3'- -CCaCC------ACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 88869 0.68 0.849498
Target:  5'- uGGUGGUGGAggaaCUGGUgcguuauucUCUGCUaaGGUUg -3'
miRNA:   3'- -CCACCACCUg---GACCA---------GGACGA--CCAGg -5'
31681 3' -58.2 NC_006883.1 + 28015 0.68 0.849498
Target:  5'- --aGGcGGAaCUGGUCCaaCUGGUCCu -3'
miRNA:   3'- ccaCCaCCUgGACCAGGacGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23004 0.68 0.849498
Target:  5'- -aUGGUGcuCCUGGUCCUcaaGGUCCu -3'
miRNA:   3'- ccACCACcuGGACCAGGAcgaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26792 0.68 0.849498
Target:  5'- -cUGGUGGACCagcaggaccaguUGGaCCUGCaGGaCCa -3'
miRNA:   3'- ccACCACCUGG------------ACCaGGACGaCCaGG- -5'
31681 3' -58.2 NC_006883.1 + 235935 0.68 0.834143
Target:  5'- uGGUGGUGGugcuUCUGGUUCUGCa----- -3'
miRNA:   3'- -CCACCACCu---GGACCAGGACGaccagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.