miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 3' -51.5 NC_006883.1 + 23670 0.66 0.998246
Target:  5'- ----cUGGUCCaaCUGGUcCGACUGGu -3'
miRNA:   3'- ucauuACCAGGacGACCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 232289 0.66 0.997911
Target:  5'- --cAGUGGUCUacuaCUGGUGCAGCa-- -3'
miRNA:   3'- ucaUUACCAGGac--GACCACGUUGacc -5'
31682 3' -51.5 NC_006883.1 + 236507 0.66 0.997524
Target:  5'- -aUAAUGGUggUGaCUGGUGUucACUGGa -3'
miRNA:   3'- ucAUUACCAggAC-GACCACGu-UGACC- -5'
31682 3' -51.5 NC_006883.1 + 79525 0.66 0.995989
Target:  5'- uAGUAAUGGuaaUCCUGCUauuGGUaUAGgUGGa -3'
miRNA:   3'- -UCAUUACC---AGGACGA---CCAcGUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 38997 0.66 0.995989
Target:  5'- uGGUAGUGGUCCUuucagauauuCUGGUGUAGgUa- -3'
miRNA:   3'- -UCAUUACCAGGAc---------GACCACGUUgAcc -5'
31682 3' -51.5 NC_006883.1 + 26263 0.66 0.995989
Target:  5'- aGGUAAUGGUCCaGCaGGUccuacagguccaGCAGguccucCUGGa -3'
miRNA:   3'- -UCAUUACCAGGaCGaCCA------------CGUU------GACC- -5'
31682 3' -51.5 NC_006883.1 + 36487 0.67 0.994586
Target:  5'- -uUAGUGGaaauaauuaUUCUGgUGGUGUAAUUGGu -3'
miRNA:   3'- ucAUUACC---------AGGACgACCACGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 112318 0.67 0.993749
Target:  5'- ---nGUGGaUCUGgUGGUGCuACUGGu -3'
miRNA:   3'- ucauUACCaGGACgACCACGuUGACC- -5'
31682 3' -51.5 NC_006883.1 + 39554 0.67 0.99281
Target:  5'- aAGgagAGUGGccuguUgCUGCUGGUGUAugUGa -3'
miRNA:   3'- -UCa--UUACC-----AgGACGACCACGUugACc -5'
31682 3' -51.5 NC_006883.1 + 27985 0.68 0.989309
Target:  5'- uGGaGAUGGUCCUcCaGGUcCAACUGGu -3'
miRNA:   3'- -UCaUUACCAGGAcGaCCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 21536 0.68 0.989309
Target:  5'- cGGUccUGGUCCUGCUGGcccucaagGUGAUguUGGu -3'
miRNA:   3'- -UCAuuACCAGGACGACCa-------CGUUG--ACC- -5'
31682 3' -51.5 NC_006883.1 + 21728 0.68 0.986962
Target:  5'- aAGUGGagguccugguccaacUGGUCCUGCUGGUcCuACgGGu -3'
miRNA:   3'- -UCAUU---------------ACCAGGACGACCAcGuUGaCC- -5'
31682 3' -51.5 NC_006883.1 + 21926 0.68 0.986153
Target:  5'- uGGUGGuccUGGUCCUGCUGGUccuccagGuCAGaUGGu -3'
miRNA:   3'- -UCAUU---ACCAGGACGACCA-------C-GUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 16176 0.68 0.984601
Target:  5'- cGGcAAUGGU---GCUGGUGgGACUGGu -3'
miRNA:   3'- -UCaUUACCAggaCGACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 26413 0.69 0.982724
Target:  5'- -----aGGUCCaGgUGGUGgAACUGGu -3'
miRNA:   3'- ucauuaCCAGGaCgACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27499 0.69 0.98068
Target:  5'- ----cUGGUCCUGCUGGaGCAAg--- -3'
miRNA:   3'- ucauuACCAGGACGACCaCGUUgacc -5'
31682 3' -51.5 NC_006883.1 + 234378 0.69 0.978461
Target:  5'- -----gGGUgCUGgUGGUGgAGCUGGa -3'
miRNA:   3'- ucauuaCCAgGACgACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 22585 0.69 0.976058
Target:  5'- uGGUAGUGGaaCUGCaaguauaucUGGUaCAACUGGa -3'
miRNA:   3'- -UCAUUACCagGACG---------ACCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 21793 0.69 0.976058
Target:  5'- ----cUGGUCCUGCUGGUGguccuccaggucCucCUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCAC------------GuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 28083 0.7 0.968903
Target:  5'- ----cUGGUCCUGCUGGUccuccaggaccuccuGguGCUGa -3'
miRNA:   3'- ucauuACCAGGACGACCA---------------CguUGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.