miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 5' -57.1 NC_006883.1 + 24686 0.67 0.90937
Target:  5'- gGUCCuACaGGUCCaagUGGUCCAUCAg -3'
miRNA:   3'- -CAGGuUGaCCAGGacgACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 22078 0.67 0.903387
Target:  5'- -aCCAGgaGGaCCUGgaGGaCCACCAg -3'
miRNA:   3'- caGGUUgaCCaGGACgaCCaGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 27594 0.67 0.903387
Target:  5'- uUCCAGgaggacCUGGaggaCCUGCUGGaccugugCCACCAc -3'
miRNA:   3'- cAGGUU------GACCa---GGACGACCa------GGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 27447 0.67 0.903387
Target:  5'- gGUCCuACUGGUCCgacaGGUCCcacaggACCAa -3'
miRNA:   3'- -CAGGuUGACCAGGacgaCCAGG------UGGU- -5'
31682 5' -57.1 NC_006883.1 + 27666 0.67 0.893358
Target:  5'- uUCCAGgaggacCUGGaggaCCUGCUGGaccuggaguaccaguUCCACCAu -3'
miRNA:   3'- cAGGUU------GACCa---GGACGACC---------------AGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 38578 0.67 0.890764
Target:  5'- -aCCGAaauaUGGUCCUGCcuUGGUUaCACUAa -3'
miRNA:   3'- caGGUUg---ACCAGGACG--ACCAG-GUGGU- -5'
31682 5' -57.1 NC_006883.1 + 23242 0.67 0.88413
Target:  5'- -aCCAGUUGGaCCUGgaGGaCCACCAg -3'
miRNA:   3'- caGGUUGACCaGGACgaCCaGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 28366 0.68 0.870237
Target:  5'- -aCCAGgaGGUCCUGgaGGaCCAgCAg -3'
miRNA:   3'- caGGUUgaCCAGGACgaCCaGGUgGU- -5'
31682 5' -57.1 NC_006883.1 + 23111 0.69 0.832083
Target:  5'- gGUCCAACUGGUCCcaCaGGUcCCACa- -3'
miRNA:   3'- -CAGGUUGACCAGGacGaCCA-GGUGgu -5'
31682 5' -57.1 NC_006883.1 + 21612 0.69 0.823913
Target:  5'- -----nCUGGUCCUGCuggUGGUCCuCCAg -3'
miRNA:   3'- cagguuGACCAGGACG---ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 26561 0.69 0.807089
Target:  5'- uUCCAGgaGGaCCUGCUGGaCCugUAg -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCaGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 27384 0.69 0.798448
Target:  5'- gGUCCAGCaGGUCCUcCaGGUCCuCCu -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGuGGu -5'
31682 5' -57.1 NC_006883.1 + 27312 0.69 0.798448
Target:  5'- gGUCCAGCaGGUCCUcCaGGUCCuCCu -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGuGGu -5'
31682 5' -57.1 NC_006883.1 + 39727 0.69 0.786117
Target:  5'- cUCCAugUGauauugauaaUGCUGGUCCACCAu -3'
miRNA:   3'- cAGGUugACcagg------ACGACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 26700 0.7 0.780752
Target:  5'- uUUCAcaaGGUCCUGCUGGUUCuCCAg -3'
miRNA:   3'- cAGGUugaCCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 28271 0.7 0.780752
Target:  5'- gGUCCuucagguggAAgUGGUCCUcCaGGUCCACCAg -3'
miRNA:   3'- -CAGG---------UUgACCAGGAcGaCCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 26486 0.7 0.771712
Target:  5'- gGUCCuGCUGGUgCaaCUGGUCCugCAn -3'
miRNA:   3'- -CAGGuUGACCAgGacGACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 3029 0.7 0.743921
Target:  5'- uGUCC-AUUGGUUCUuuuuccccauCUGGUCCACCAu -3'
miRNA:   3'- -CAGGuUGACCAGGAc---------GACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 31571 0.71 0.695875
Target:  5'- uUCCAccuaaucuaaaaGCUGGUCCUGCUGGUggAUUAa -3'
miRNA:   3'- cAGGU------------UGACCAGGACGACCAggUGGU- -5'
31682 5' -57.1 NC_006883.1 + 222807 0.72 0.666378
Target:  5'- gGUCCucCUGGUCCUGCUGGUg----- -3'
miRNA:   3'- -CAGGuuGACCAGGACGACCAgguggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.