miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 3' -55.4 NC_006883.1 + 22069 0.66 0.984257
Target:  5'- aCCuGgAGGaCCaccaGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGcUgUCCaGGg---UGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 21827 0.66 0.980481
Target:  5'- uCCaAguGGUCCUcCAGGuCCGAgUGGu -3'
miRNA:   3'- -GGcUguCCAGGGuGUCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 23419 0.66 0.978357
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAuCUGGn -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUuGACC- -5'
31683 3' -55.4 NC_006883.1 + 21973 0.66 0.976067
Target:  5'- uCCucCuGGUCCUGCuGGAUCuGCUGGu -3'
miRNA:   3'- -GGcuGuCCAGGGUGuCCUGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 22143 0.66 0.973604
Target:  5'- -gGAcCAGGUgaaCCACuuGGACCAGCaGGa -3'
miRNA:   3'- ggCU-GUCCAg--GGUGu-CCUGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 23725 0.67 0.970963
Target:  5'- aCCuGCuGGaCCUGgAGGACCuGCUGGa -3'
miRNA:   3'- -GGcUGuCCaGGGUgUCCUGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27878 0.67 0.970963
Target:  5'- uCCaACuGGUCCUuCAGGuggaacugguCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCu---------GGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 26429 0.67 0.961911
Target:  5'- aCUGGuacucCAGGUCCaGCAGGuCCucCUGGa -3'
miRNA:   3'- -GGCU-----GUCCAGGgUGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 222950 0.67 0.958501
Target:  5'- aCCaGCAGGaCCaGCAGGACCAGgaGa -3'
miRNA:   3'- -GGcUGUCCaGGgUGUCCUGGUUgaCc -5'
31683 3' -55.4 NC_006883.1 + 26398 0.67 0.958501
Target:  5'- uCCaGAC-GGUCCUcCAGGuCCAGgUGGu -3'
miRNA:   3'- -GG-CUGuCCAGGGuGUCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 28054 0.68 0.954887
Target:  5'- uCCucCAGGUCCUcCAGGuCCAggcggaACUGGn -3'
miRNA:   3'- -GGcuGUCCAGGGuGUCCuGGU------UGACC- -5'
31683 3' -55.4 NC_006883.1 + 28183 0.68 0.947034
Target:  5'- uCCGuCAGcaCCaGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGCuGUCcaGGgUGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 21707 0.69 0.928757
Target:  5'- uCCuGCAGGUCCUcCuGGuCCAAgUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGuCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 23176 0.69 0.920471
Target:  5'- aCCaGCAGGUCCaguUaaaccuggagcaccaGCAGGACCAGUUGGa -3'
miRNA:   3'- -GGcUGUCCAGG---G---------------UGUCCUGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23090 0.69 0.912762
Target:  5'- cCUG-UAGGUCCUucaaaucCAGGuCCAACUGGn -3'
miRNA:   3'- -GGCuGUCCAGGGu------GUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23062 0.7 0.901016
Target:  5'- uCCuGCuGGUUCUcCAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 28246 0.7 0.894823
Target:  5'- uCCGACuGGUCCaACuGGuCCAACaGGu -3'
miRNA:   3'- -GGCUGuCCAGGgUGuCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 22252 0.7 0.88842
Target:  5'- aCCaGCAGaUCCaGCAGGACCAGgaGGa -3'
miRNA:   3'- -GGcUGUCcAGGgUGUCCUGGUUgaCC- -5'
31683 3' -55.4 NC_006883.1 + 21860 0.7 0.881811
Target:  5'- aCCaGCAGGUCCaguaggacCAGGACCAccACUcGGa -3'
miRNA:   3'- -GGcUGUCCAGGgu------GUCCUGGU--UGA-CC- -5'
31683 3' -55.4 NC_006883.1 + 162720 0.7 0.875
Target:  5'- uCUGGCAGGUgCUcCAGGAUCAGCa-- -3'
miRNA:   3'- -GGCUGUCCAgGGuGUCCUGGUUGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.