miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 3' -52.9 NC_006883.1 + 210650 0.66 0.993586
Target:  5'- --gCUGCAuuuGGUuggCCAACUGGUCCAc-- -3'
miRNA:   3'- cugGAUGU---CCA---GGUUGACCAGGUuga -5'
31684 3' -52.9 NC_006883.1 + 23718 0.66 0.99158
Target:  5'- gGACCUGgAGGaCCuGCUGGaCCAGa- -3'
miRNA:   3'- -CUGGAUgUCCaGGuUGACCaGGUUga -5'
31684 3' -52.9 NC_006883.1 + 21911 0.66 0.991355
Target:  5'- -uCCUcCAGGUCCuagugguggucCUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGuu---------GACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21862 0.66 0.990406
Target:  5'- gGACCaGCAGGUCCAGuaGGaCCAGg- -3'
miRNA:   3'- -CUGGaUGUCCAGGUUgaCCaGGUUga -5'
31684 3' -52.9 NC_006883.1 + 21964 0.66 0.990406
Target:  5'- -uCCaAguGGUCCucCUGGUCCuGCUg -3'
miRNA:   3'- cuGGaUguCCAGGuuGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 27378 0.67 0.986105
Target:  5'- --aCUcCAGGUCCAGCaGGUCCucCa -3'
miRNA:   3'- cugGAuGUCCAGGUUGaCCAGGuuGa -5'
31684 3' -52.9 NC_006883.1 + 21969 0.67 0.982504
Target:  5'- gGACCUGCAGGaCCAGgaGaUCCAGu- -3'
miRNA:   3'- -CUGGAUGUCCaGGUUgaCcAGGUUga -5'
31684 3' -52.9 NC_006883.1 + 23918 0.67 0.98046
Target:  5'- gGACCUGUAGGaCCuGCUGGaccuguugaUCCAACa -3'
miRNA:   3'- -CUGGAUGUCCaGGuUGACC---------AGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 27305 0.68 0.973258
Target:  5'- uGGC--ACAGGUCCAGCaGGUCCucCa -3'
miRNA:   3'- -CUGgaUGUCCAGGUUGaCCAGGuuGa -5'
31684 3' -52.9 NC_006883.1 + 23026 0.68 0.967495
Target:  5'- -uCCUccagguaucGguGGUCCAACUGGUCCu--- -3'
miRNA:   3'- cuGGA---------UguCCAGGUUGACCAGGuuga -5'
31684 3' -52.9 NC_006883.1 + 28193 0.68 0.967495
Target:  5'- gGACCUcCAGGUCCuACUGGUggaGAUg -3'
miRNA:   3'- -CUGGAuGUCCAGGuUGACCAgg-UUGa -5'
31684 3' -52.9 NC_006883.1 + 26407 0.69 0.962291
Target:  5'- -uCCUcCAGGUCCAggugguggaacugguACUccaGGUCCAGCa -3'
miRNA:   3'- cuGGAuGUCCAGGU---------------UGA---CCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 24710 0.69 0.949374
Target:  5'- -----uCAGGUCCAAgUGGUCCAAgUg -3'
miRNA:   3'- cuggauGUCCAGGUUgACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 222725 0.7 0.935779
Target:  5'- -uCCUGCuGGUUCGcCUGGUgCAACUg -3'
miRNA:   3'- cuGGAUGuCCAGGUuGACCAgGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 23352 0.7 0.92554
Target:  5'- gGACCUACAGGaCCAGuuggacCUGGagaaCCAGCa -3'
miRNA:   3'- -CUGGAUGUCCaGGUU------GACCa---GGUUGa -5'
31684 3' -52.9 NC_006883.1 + 26769 0.7 0.92554
Target:  5'- gGACCUGCAGGaCCAGUUGcaCCAGCa -3'
miRNA:   3'- -CUGGAUGUCCaGGUUGACcaGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 222680 0.71 0.914354
Target:  5'- -uCCUGCuGGUCCugcugguggAACUGGUCCAc-- -3'
miRNA:   3'- cuGGAUGuCCAGG---------UUGACCAGGUuga -5'
31684 3' -52.9 NC_006883.1 + 24742 0.71 0.902227
Target:  5'- -uCCUcCAGGUCCucCaGGUCCAACa -3'
miRNA:   3'- cuGGAuGUCCAGGuuGaCCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 23178 0.72 0.87523
Target:  5'- gGACCaGCAGGUCCAGuuaaacCUGGagcaCCAGCa -3'
miRNA:   3'- -CUGGaUGUCCAGGUU------GACCa---GGUUGa -5'
31684 3' -52.9 NC_006883.1 + 21863 0.73 0.836696
Target:  5'- -uCCUGCuGGUCCAAgUGGUUCAcCUg -3'
miRNA:   3'- cuGGAUGuCCAGGUUgACCAGGUuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.