miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 5' -53.6 NC_006883.1 + 220755 0.66 0.993532
Target:  5'- uGGAGCUGGUUCuuCUGGUggaUCUaGCg-- -3'
miRNA:   3'- -CCUUGACCAGGuuGACCA---GGA-CGacc -5'
31684 5' -53.6 NC_006883.1 + 212010 0.66 0.993532
Target:  5'- uGGAAgUGGUUCAACaGGUcaauuaaaucugCCUaGUUGGu -3'
miRNA:   3'- -CCUUgACCAGGUUGaCCA------------GGA-CGACC- -5'
31684 5' -53.6 NC_006883.1 + 28000 0.66 0.991555
Target:  5'- -----aGGUCCAACUGGUCCa----- -3'
miRNA:   3'- ccuugaCCAGGUUGACCAGGacgacc -5'
31684 5' -53.6 NC_006883.1 + 230238 0.66 0.991445
Target:  5'- aGGugauaUGGUCUAuuacaccACUGGUUCUGCUa- -3'
miRNA:   3'- -CCuug--ACCAGGU-------UGACCAGGACGAcc -5'
31684 5' -53.6 NC_006883.1 + 27749 0.66 0.990402
Target:  5'- uGGAcCUGuGggaCCAGUUGGUCCUGUgGGa -3'
miRNA:   3'- -CCUuGAC-Ca--GGUUGACCAGGACGaCC- -5'
31684 5' -53.6 NC_006883.1 + 21815 0.66 0.990402
Target:  5'- aGGuccucCUGGUCCAAgUGGUCCUc---- -3'
miRNA:   3'- -CCuu---GACCAGGUUgACCAGGAcgacc -5'
31684 5' -53.6 NC_006883.1 + 27446 0.66 0.989128
Target:  5'- aGGuccuACUGGUCCGACaGGUCCc----- -3'
miRNA:   3'- -CCu---UGACCAGGUUGaCCAGGacgacc -5'
31684 5' -53.6 NC_006883.1 + 39879 0.66 0.987727
Target:  5'- uGGuGCUGGUgguaaUGGUgCUGCUGGu -3'
miRNA:   3'- -CCuUGACCAgguugACCAgGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26707 0.66 0.987727
Target:  5'- aGGuccuGCUGGUUCucCaGGUCCUcCUGGu -3'
miRNA:   3'- -CCu---UGACCAGGuuGaCCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 27305 0.66 0.987727
Target:  5'- uGGcACaGGUCCAGCaGGUCCUccagguccucCUGGa -3'
miRNA:   3'- -CCuUGaCCAGGUUGaCCAGGAc---------GACC- -5'
31684 5' -53.6 NC_006883.1 + 23635 0.67 0.98619
Target:  5'- uGGAucaACaGGUCCAGCaGGUCCUaCaGGu -3'
miRNA:   3'- -CCU---UGaCCAGGUUGaCCAGGAcGaCC- -5'
31684 5' -53.6 NC_006883.1 + 192092 0.67 0.9852
Target:  5'- uGGccuGCUGGUgUAggugguaaggguaauGCUGGUgUUGCUGGu -3'
miRNA:   3'- -CCu--UGACCAgGU---------------UGACCAgGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 27284 0.67 0.98451
Target:  5'- -----aGGUCCAGgUGGUCCaGgUGGu -3'
miRNA:   3'- ccuugaCCAGGUUgACCAGGaCgACC- -5'
31684 5' -53.6 NC_006883.1 + 26554 0.68 0.970999
Target:  5'- aGGAccuGCUGGaCCugUaGGaCCUGCUGGa -3'
miRNA:   3'- -CCU---UGACCaGGuuGaCCaGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 194095 0.68 0.968111
Target:  5'- uGGAGCaaUGGUUgG--UGGUgCUGCUGGu -3'
miRNA:   3'- -CCUUG--ACCAGgUugACCAgGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 28177 0.69 0.958235
Target:  5'- aGGAAgUGGUCCuccagGACcuccaGGUCCUaCUGGu -3'
miRNA:   3'- -CCUUgACCAGG-----UUGa----CCAGGAcGACC- -5'
31684 5' -53.6 NC_006883.1 + 230293 0.69 0.942072
Target:  5'- -uAACUaaGGUCCAauuuGCUGGUgUUGUUGGg -3'
miRNA:   3'- ccUUGA--CCAGGU----UGACCAgGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26467 0.7 0.932649
Target:  5'- uGGAGCagaUGGaaguaaUGGUCCUGCUGGu -3'
miRNA:   3'- -CCUUG---ACCagguugACCAGGACGACC- -5'
31684 5' -53.6 NC_006883.1 + 26587 0.7 0.922315
Target:  5'- uGGAACUucaGcUCCAuCUGGUCCuucaacUGCUGGu -3'
miRNA:   3'- -CCUUGA---CcAGGUuGACCAGG------ACGACC- -5'
31684 5' -53.6 NC_006883.1 + 24717 0.7 0.916806
Target:  5'- -cAAgUGGUCCAAgUGGUCCUaGC-GGu -3'
miRNA:   3'- ccUUgACCAGGUUgACCAGGA-CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.