miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 3' -55.8 NC_006883.1 + 222800 0.78 0.462924
Target:  5'- uCCucCaGGUCCUcCUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGaCCAGGAcGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 222744 0.84 0.232901
Target:  5'- gCaACUGGUCCUGUuggaaauccUGGUCCUACUGGu -3'
miRNA:   3'- gGcUGACCAGGACG---------ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 222720 0.79 0.428112
Target:  5'- ---cCUGGUCCUGCUGGUUCgcCUGGu -3'
miRNA:   3'- ggcuGACCAGGACGACCAGGauGACC- -5'
31685 3' -55.8 NC_006883.1 + 222671 0.95 0.048332
Target:  5'- uUCucCUGGUCCUGCUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcuGACCAGGACGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 222645 0.98 0.03021
Target:  5'- aCuACUGGUCCUGCUGGUCCUACUGGu -3'
miRNA:   3'- gGcUGACCAGGACGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 200634 0.66 0.975299
Target:  5'- -aGACUGGUCgUGCUGGacaUCCa----- -3'
miRNA:   3'- ggCUGACCAGgACGACC---AGGaugacc -5'
31685 3' -55.8 NC_006883.1 + 193992 0.7 0.879458
Target:  5'- uUGG-UGGUgCUGCUGGUgCUACUGu -3'
miRNA:   3'- gGCUgACCAgGACGACCAgGAUGACc -5'
31685 3' -55.8 NC_006883.1 + 192094 0.67 0.962156
Target:  5'- gCCuGCUGGUgUaggugguaaggguaaUGCUGGUgUUGCUGGu -3'
miRNA:   3'- -GGcUGACCAgG---------------ACGACCAgGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 121405 0.66 0.967182
Target:  5'- aCCuuGCUGGcguucagCCUaugaaUGGUCCUACUGGa -3'
miRNA:   3'- -GGc-UGACCa------GGAcg---ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 121314 0.69 0.892631
Target:  5'- gCCGAUgcuacUgCUGCUGGUCCaguUGCUGGu -3'
miRNA:   3'- -GGCUGacc--AgGACGACCAGG---AUGACC- -5'
31685 3' -55.8 NC_006883.1 + 112312 0.68 0.941326
Target:  5'- -gGuACUGGUggaUCUGgUGGUgCUACUGGu -3'
miRNA:   3'- ggC-UGACCA---GGACgACCAgGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 38578 0.66 0.975299
Target:  5'- aCCGAaauaUGGUCCUGCcuUGGUUacACUa- -3'
miRNA:   3'- -GGCUg---ACCAGGACG--ACCAGgaUGAcc -5'
31685 3' -55.8 NC_006883.1 + 31587 0.74 0.672636
Target:  5'- --aGCUGGUCCUGCUGGUggauuaagUGCUGGu -3'
miRNA:   3'- ggcUGACCAGGACGACCAgg------AUGACC- -5'
31685 3' -55.8 NC_006883.1 + 28333 0.67 0.949756
Target:  5'- uCCGcCUGGaCCUGgaGGaCCUGgaGGa -3'
miRNA:   3'- -GGCuGACCaGGACgaCCaGGAUgaCC- -5'
31685 3' -55.8 NC_006883.1 + 28246 0.79 0.419653
Target:  5'- uCCGACUGGUCCaaCUGGUCCaACaGGu -3'
miRNA:   3'- -GGCUGACCAGGacGACCAGGaUGaCC- -5'
31685 3' -55.8 NC_006883.1 + 28212 0.67 0.945649
Target:  5'- gUGGagaUGGUCCUcCUGGUCCaGgUGGa -3'
miRNA:   3'- gGCUg--ACCAGGAcGACCAGGaUgACC- -5'
31685 3' -55.8 NC_006883.1 + 28077 0.83 0.243946
Target:  5'- gCGgaACUGGUCCUGCUGGUCCUcCaGGa -3'
miRNA:   3'- gGC--UGACCAGGACGACCAGGAuGaCC- -5'
31685 3' -55.8 NC_006883.1 + 28017 0.82 0.273462
Target:  5'- gCGgaACUGGUCCaaCUGGUCCUACUGGu -3'
miRNA:   3'- gGC--UGACCAGGacGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 27958 1.12 0.004155
Target:  5'- uCCGACUGGUCCUGCUGGUCCUACUGGu -3'
miRNA:   3'- -GGCUGACCAGGACGACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 27899 0.81 0.319495
Target:  5'- --aACUGGUCCaaCUGGUCCUGCUGGu -3'
miRNA:   3'- ggcUGACCAGGacGACCAGGAUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.