miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 5' -57.4 NC_006883.1 + 212558 0.66 0.931988
Target:  5'- -aUCUCCAGGcUUAACUGGaUCAGGa -3'
miRNA:   3'- caGGAGGUCCaGGUUGACCaGGUCCg -5'
31685 5' -57.4 NC_006883.1 + 23419 0.66 0.926989
Target:  5'- -aCCUgUAGGaCCAuCUGGUCCAGu- -3'
miRNA:   3'- caGGAgGUCCaGGUuGACCAGGUCcg -5'
31685 5' -57.4 NC_006883.1 + 211683 0.66 0.926989
Target:  5'- -aCCUuuagcaUCAGGauaccauuUCCAAcCUGGUCCAGGa -3'
miRNA:   3'- caGGA------GGUCC--------AGGUU-GACCAGGUCCg -5'
31685 5' -57.4 NC_006883.1 + 21888 0.66 0.916329
Target:  5'- gGUCCUCCAGGUCCuAgUGGUn----- -3'
miRNA:   3'- -CAGGAGGUCCAGGuUgACCAgguccg -5'
31685 5' -57.4 NC_006883.1 + 21751 0.67 0.892387
Target:  5'- nUCCUgCuGGUCCuACgGGUCCAGa- -3'
miRNA:   3'- cAGGAgGuCCAGGuUGaCCAGGUCcg -5'
31685 5' -57.4 NC_006883.1 + 28022 0.68 0.872211
Target:  5'- -----aCuGGUCCAACUGGUCCuacuGGUg -3'
miRNA:   3'- caggagGuCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 232241 0.68 0.857759
Target:  5'- aGUCagaCAGGUCCuACUGGUaaGGGUa -3'
miRNA:   3'- -CAGgagGUCCAGGuUGACCAggUCCG- -5'
31685 5' -57.4 NC_006883.1 + 27447 0.68 0.834685
Target:  5'- gGUCCUaCuGGUCCGACaGGUCCcacAGGa -3'
miRNA:   3'- -CAGGAgGuCCAGGUUGaCCAGG---UCCg -5'
31685 5' -57.4 NC_006883.1 + 22897 0.69 0.81008
Target:  5'- nUgCUCCAGGUUUAACUGGaCCugcuGGUc -3'
miRNA:   3'- cAgGAGGUCCAGGUUGACCaGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26370 0.69 0.81008
Target:  5'- nUCC-CaCAgguggaacuGGUCCAACUGGUCCAGa- -3'
miRNA:   3'- cAGGaG-GU---------CCAGGUUGACCAGGUCcg -5'
31685 5' -57.4 NC_006883.1 + 27956 0.7 0.747814
Target:  5'- gGUCCgacuGGUCCuGCUGGUCCuacuGGUg -3'
miRNA:   3'- -CAGGagguCCAGGuUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 28094 0.71 0.729059
Target:  5'- gGUCCUCCAGGaCCucCUGGUgCugacGGUg -3'
miRNA:   3'- -CAGGAGGUCCaGGuuGACCAgGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 27321 0.72 0.631922
Target:  5'- gGUCCUCCAGGUCCucCUGGaaaugauGGUg -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGACCaggu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 23130 0.72 0.631922
Target:  5'- nUCC-CaCAGGUCCAACUGGaCCAGa- -3'
miRNA:   3'- cAGGaG-GUCCAGGUUGACCaGGUCcg -5'
31685 5' -57.4 NC_006883.1 + 222750 0.73 0.612258
Target:  5'- gGUCCuguuggaaaUCCuGGUCCuACUGGUCCuucuGGUg -3'
miRNA:   3'- -CAGG---------AGGuCCAGGuUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 53193 0.74 0.563449
Target:  5'- uUUCUCCAGGUCUuuUUuGUCCAGGUa -3'
miRNA:   3'- cAGGAGGUCCAGGuuGAcCAGGUCCG- -5'
31685 5' -57.4 NC_006883.1 + 28139 0.75 0.50638
Target:  5'- gGUCCUCCAGGUCCucCaGGUUCugauGGUu -3'
miRNA:   3'- -CAGGAGGUCCAGGuuGaCCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 24705 0.75 0.469734
Target:  5'- nUCCaUCAGGUCCAAgUGGUCCAaguGGUc -3'
miRNA:   3'- cAGGaGGUCCAGGUUgACCAGGU---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26342 0.75 0.469734
Target:  5'- gGUgCaaCAGGUCCAACUGGUCCugcuGGUc -3'
miRNA:   3'- -CAgGagGUCCAGGUUGACCAGGu---CCG- -5'
31685 5' -57.4 NC_006883.1 + 26279 0.75 0.460784
Target:  5'- gGUCCUaCAGGUCCAGCaGGUCCuccuGGa -3'
miRNA:   3'- -CAGGAgGUCCAGGUUGaCCAGGu---CCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.