miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31686 3' -49.8 NC_006883.1 + 40015 0.66 0.999858
Target:  5'- -gUCCAGGUgguaCUGGUGaagaUGGUGGa -3'
miRNA:   3'- ggAGGUCCAa---GACUACcaagACUACC- -5'
31686 3' -49.8 NC_006883.1 + 234373 0.66 0.99982
Target:  5'- aUUUgGGGUgCUGGUGGUggagCUGGaaUGGg -3'
miRNA:   3'- gGAGgUCCAaGACUACCAa---GACU--ACC- -5'
31686 3' -49.8 NC_006883.1 + 90485 0.66 0.999712
Target:  5'- aUCUCCugcuGGUaCUGGUGGUUCUu---- -3'
miRNA:   3'- -GGAGGu---CCAaGACUACCAAGAcuacc -5'
31686 3' -49.8 NC_006883.1 + 186867 0.66 0.999712
Target:  5'- gUUUCAGGUgCUGAUGGagcaUCUGGUa- -3'
miRNA:   3'- gGAGGUCCAaGACUACCa---AGACUAcc -5'
31686 3' -49.8 NC_006883.1 + 28063 0.67 0.999553
Target:  5'- uCCUCCAGGUccaggCgGAacUGGUcCUGcUGGu -3'
miRNA:   3'- -GGAGGUCCAa----GaCU--ACCAaGACuACC- -5'
31686 3' -49.8 NC_006883.1 + 112101 0.67 0.999448
Target:  5'- uUCUgCuGGUggUGGUGGagCUGGUGGa -3'
miRNA:   3'- -GGAgGuCCAagACUACCaaGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 21947 0.67 0.999448
Target:  5'- uCCUCCAGG-UCaGAUGGUcCaaGUGGn -3'
miRNA:   3'- -GGAGGUCCaAGaCUACCAaGacUACC- -5'
31686 3' -49.8 NC_006883.1 + 23026 0.67 0.999322
Target:  5'- uCCUCCAGGUaUC-GGUGGUccaaCUGGUc- -3'
miRNA:   3'- -GGAGGUCCA-AGaCUACCAa---GACUAcc -5'
31686 3' -49.8 NC_006883.1 + 226063 0.67 0.999155
Target:  5'- gCUgUAGGUUCUGAUgcaggaaGGUauuuaaCUGGUGGa -3'
miRNA:   3'- gGAgGUCCAAGACUA-------CCAa-----GACUACC- -5'
31686 3' -49.8 NC_006883.1 + 26452 0.67 0.998994
Target:  5'- uCCUCCuGGaaaUGAUGGagCaGAUGGa -3'
miRNA:   3'- -GGAGGuCCaagACUACCaaGaCUACC- -5'
31686 3' -49.8 NC_006883.1 + 243774 0.68 0.998784
Target:  5'- aCUCUAGG-UUUGAUGGUaaugUUGGUGu -3'
miRNA:   3'- gGAGGUCCaAGACUACCAa---GACUACc -5'
31686 3' -49.8 NC_006883.1 + 24751 0.68 0.998538
Target:  5'- uCCUCCAGGUcCaacagGA-GGUUCUGGg-- -3'
miRNA:   3'- -GGAGGUCCAaGa----CUaCCAAGACUacc -5'
31686 3' -49.8 NC_006883.1 + 21836 0.69 0.995364
Target:  5'- uCCUCCAGGUcCgaGUGGUggaGAUGGu -3'
miRNA:   3'- -GGAGGUCCAaGacUACCAagaCUACC- -5'
31686 3' -49.8 NC_006883.1 + 21973 0.69 0.994629
Target:  5'- uCCUCCuGGUcCUGcUGGaUCUGcUGGu -3'
miRNA:   3'- -GGAGGuCCAaGACuACCaAGACuACC- -5'
31686 3' -49.8 NC_006883.1 + 23455 0.7 0.99069
Target:  5'- uCCUCCAGGUccagcaggUCcuccUGGaUCUGGUGGu -3'
miRNA:   3'- -GGAGGUCCA--------AGacu-ACCaAGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 112298 0.7 0.989417
Target:  5'- -gUCCAgcugaugguGGUaCUGGUGGaUCUGGUGGu -3'
miRNA:   3'- ggAGGU---------CCAaGACUACCaAGACUACC- -5'
31686 3' -49.8 NC_006883.1 + 21911 0.71 0.984771
Target:  5'- uCCUCCAGGUcCuagUGGUGGUcCUGGUc- -3'
miRNA:   3'- -GGAGGUCCAaG---ACUACCAaGACUAcc -5'
31686 3' -49.8 NC_006883.1 + 26407 0.71 0.98292
Target:  5'- uCCUCCAGGUcCaGGUGGUggaaCUGGUa- -3'
miRNA:   3'- -GGAGGUCCAaGaCUACCAa---GACUAcc -5'
31686 3' -49.8 NC_006883.1 + 21509 0.72 0.979612
Target:  5'- uCCUCCAGGUccuUCUGGuccagguggcgguccUGGUcCUGcUGGc -3'
miRNA:   3'- -GGAGGUCCA---AGACU---------------ACCAaGACuACC- -5'
31686 3' -49.8 NC_006883.1 + 22972 0.72 0.978715
Target:  5'- uCCUCCAGGUccaaCUGGuccugcUGGUgaUGAUGGu -3'
miRNA:   3'- -GGAGGUCCAa---GACU------ACCAagACUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.