miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31686 5' -58.1 NC_006883.1 + 27527 0.66 0.910166
Target:  5'- -aUCUCCAccuguaggaccugauGGACCUgUAGGaCCUGCUg -3'
miRNA:   3'- caGGAGGU---------------CCUGGAgGUCCaGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 23185 0.66 0.901867
Target:  5'- -aCCaUCAGGACCagCAGGUCCa--- -3'
miRNA:   3'- caGGaGGUCCUGGagGUCCAGGauga -5'
31686 5' -58.1 NC_006883.1 + 21994 0.66 0.895681
Target:  5'- ----aCCAGGACCUCCacuuggaccaggAGGaCCUGCa -3'
miRNA:   3'- caggaGGUCCUGGAGG------------UCCaGGAUGa -5'
31686 5' -58.1 NC_006883.1 + 27276 0.66 0.889284
Target:  5'- gGUCCUCCAGGuCCagguggUCCAGGUg----- -3'
miRNA:   3'- -CAGGAGGUCCuGG------AGGUCCAggauga -5'
31686 5' -58.1 NC_006883.1 + 23156 0.67 0.846676
Target:  5'- gGUCCUaCAGGuCCaCCAGGUCCa--- -3'
miRNA:   3'- -CAGGAgGUCCuGGaGGUCCAGGauga -5'
31686 5' -58.1 NC_006883.1 + 21777 0.68 0.838916
Target:  5'- gGUCCUaCAGGuCCaaCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAgGUCCuGGagGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 26551 0.68 0.830983
Target:  5'- -aCCUgCuGGACCUgUAGGaCCUGCUg -3'
miRNA:   3'- caGGAgGuCCUGGAgGUCCaGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 26279 0.68 0.814624
Target:  5'- gGUCCUaCAGGuCCagCAGGUCCUcCUg -3'
miRNA:   3'- -CAGGAgGUCCuGGagGUCCAGGAuGA- -5'
31686 5' -58.1 NC_006883.1 + 23645 0.68 0.806213
Target:  5'- gGUCCagCAGGuCCUaCAGGUCCaACUg -3'
miRNA:   3'- -CAGGagGUCCuGGAgGUCCAGGaUGA- -5'
31686 5' -58.1 NC_006883.1 + 222750 0.69 0.797656
Target:  5'- gGUCCUgUuGGAaaUCCuGGUCCUACUg -3'
miRNA:   3'- -CAGGAgGuCCUggAGGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 211470 0.69 0.762131
Target:  5'- gGUCCUCCAGGAUaagCUCCA--UCCUGu- -3'
miRNA:   3'- -CAGGAGGUCCUG---GAGGUccAGGAUga -5'
31686 5' -58.1 NC_006883.1 + 26531 0.7 0.734346
Target:  5'- gGUCCaCCAGGuCCaaCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGaGGUCCuGGagGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 23087 0.7 0.715401
Target:  5'- gGUCCUgUAGGuCCuucaaaUCCAGGUCCaACUg -3'
miRNA:   3'- -CAGGAgGUCCuGG------AGGUCCAGGaUGA- -5'
31686 5' -58.1 NC_006883.1 + 27465 0.7 0.700054
Target:  5'- gGUCC-CaCAGGACCaacuggucccacaggUCCAacuGGUCCUGCUg -3'
miRNA:   3'- -CAGGaG-GUCCUGG---------------AGGU---CCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21265 0.71 0.667035
Target:  5'- aUCCUUCGGGACaUCCAGGcaUCgCUGCa -3'
miRNA:   3'- cAGGAGGUCCUGgAGGUCC--AG-GAUGa -5'
31686 5' -58.1 NC_006883.1 + 26504 0.71 0.647452
Target:  5'- gGUCCUgCAGGuCCaaCuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAgGUCCuGGagGuCCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 27992 0.71 0.647452
Target:  5'- gGUCCUCCAGGuccaacugguCCaggcggaacuggUCCAacuGGUCCUACUg -3'
miRNA:   3'- -CAGGAGGUCCu---------GG------------AGGU---CCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21714 0.71 0.641566
Target:  5'- gGUCCUCCuGGuCCaaguggagguccuggUCCAacuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGuCCuGG---------------AGGU---CCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 27885 0.72 0.578923
Target:  5'- gGUCCUUCAGGuggaACUggUCCAacuGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCC----UGG--AGGU---CCAGGAUGA- -5'
31686 5' -58.1 NC_006883.1 + 21834 0.72 0.576009
Target:  5'- gGUCCUCCAGGuCCgagugguggagauGGUCCUGCUg -3'
miRNA:   3'- -CAGGAGGUCCuGGaggu---------CCAGGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.