miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31720 3' -52.2 NC_006938.1 + 56059 0.75 0.399074
Target:  5'- gAGUGGCCGGAugccagccacucGUCGAccCGGCUcaGGGCCg -3'
miRNA:   3'- -UCAUCGGCUU------------CAGUUu-GCUGA--CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 55910 0.69 0.738107
Target:  5'- uGGUGGCCGGgcAGcccuucUCGcuGAgGAcCUGGGCCg -3'
miRNA:   3'- -UCAUCGGCU--UC------AGU--UUgCU-GACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 55067 1.12 0.001489
Target:  5'- cAGUAGCCGAAGUCAAACGACUGGGCCu -3'
miRNA:   3'- -UCAUCGGCUUCAGUUUGCUGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 54694 0.69 0.735984
Target:  5'- cGUGGUCugGGAGUCAGGCGACaacaauggauuGGCCa -3'
miRNA:   3'- uCAUCGG--CUUCAGUUUGCUGac---------CCGG- -5'
31720 3' -52.2 NC_006938.1 + 54411 0.66 0.906729
Target:  5'- --cGGCCGGAGUCGAggccACcACUGuccucgcGGCCc -3'
miRNA:   3'- ucaUCGGCUUCAGUU----UGcUGAC-------CCGG- -5'
31720 3' -52.2 NC_006938.1 + 53957 0.66 0.893525
Target:  5'- aGGUccAGCgGGAGUCAgccccGACGACgaacacccGGCCc -3'
miRNA:   3'- -UCA--UCGgCUUCAGU-----UUGCUGac------CCGG- -5'
31720 3' -52.2 NC_006938.1 + 52649 0.66 0.886182
Target:  5'- gGGUuucgAGCgGcg--CAAcaGCGACUGGGCCc -3'
miRNA:   3'- -UCA----UCGgCuucaGUU--UGCUGACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 52376 0.69 0.760123
Target:  5'- gGGUcAGCCGAGGcgAGACGAUcgacgucaacccacgGGGCCa -3'
miRNA:   3'- -UCA-UCGGCUUCagUUUGCUGa--------------CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 51906 0.72 0.566599
Target:  5'- cAGUGGCgCugcagcagacgcucuGggGUCAGGCGGCggUGGGCUc -3'
miRNA:   3'- -UCAUCG-G---------------CuuCAGUUUGCUG--ACCCGG- -5'
31720 3' -52.2 NC_006938.1 + 50890 0.66 0.899903
Target:  5'- --cGGCCGAGGcgugcUCAAcgccuuccgcgagGCGGCcgaGGGCCu -3'
miRNA:   3'- ucaUCGGCUUC-----AGUU-------------UGCUGa--CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 50247 0.66 0.907397
Target:  5'- --aGGCCGggGUC---CGGC-GGGUCc -3'
miRNA:   3'- ucaUCGGCuuCAGuuuGCUGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 46073 0.74 0.487529
Target:  5'- uGGUGGCCcAGG-CAGACGGCacGGCCg -3'
miRNA:   3'- -UCAUCGGcUUCaGUUUGCUGacCCGG- -5'
31720 3' -52.2 NC_006938.1 + 45661 0.66 0.900598
Target:  5'- --aGGCCgGGAGgccgaGAACGGCUGGaGCg -3'
miRNA:   3'- ucaUCGG-CUUCag---UUUGCUGACC-CGg -5'
31720 3' -52.2 NC_006938.1 + 43260 0.67 0.862586
Target:  5'- cGGUGGCCcug--CAGACGACUGG-CUu -3'
miRNA:   3'- -UCAUCGGcuucaGUUUGCUGACCcGG- -5'
31720 3' -52.2 NC_006938.1 + 42227 0.67 0.845617
Target:  5'- cGUuGCCGGAGUCGA-UGAUgagagugGGaGCCg -3'
miRNA:   3'- uCAuCGGCUUCAGUUuGCUGa------CC-CGG- -5'
31720 3' -52.2 NC_006938.1 + 41832 0.68 0.827734
Target:  5'- --gGGCCGAcGGUCAAcacCGGCUcugucGGGCUg -3'
miRNA:   3'- ucaUCGGCU-UCAGUUu--GCUGA-----CCCGG- -5'
31720 3' -52.2 NC_006938.1 + 38936 0.68 0.789532
Target:  5'- cGUGGCCGggGUCGuAGCGcCgGaGGUa -3'
miRNA:   3'- uCAUCGGCuuCAGU-UUGCuGaC-CCGg -5'
31720 3' -52.2 NC_006938.1 + 34726 0.66 0.898505
Target:  5'- aGGgAGCgGGAGUCAGGCGAggcaCUGaccgugcgcgucgcGGCCc -3'
miRNA:   3'- -UCaUCGgCUUCAGUUUGCU----GAC--------------CCGG- -5'
31720 3' -52.2 NC_006938.1 + 34262 0.69 0.759087
Target:  5'- --aGGCgGAGGUCAAcgaGCcGCaGGGCCa -3'
miRNA:   3'- ucaUCGgCUUCAGUU---UGcUGaCCCGG- -5'
31720 3' -52.2 NC_006938.1 + 33076 0.71 0.628537
Target:  5'- gGGUGGCCG-AGUgGuAUGGCUGGcGCa -3'
miRNA:   3'- -UCAUCGGCuUCAgUuUGCUGACC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.