miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 31718 1.11 0.000534
Target:  5'- aCACCCUCGACCGCGCGACGGAACAGCu -3'
miRNA:   3'- -GUGGGAGCUGGCGCGCUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 46282 0.76 0.159148
Target:  5'- gGCCUUggcaaUGGCCGCGCGGCGGAcguugAUGGCg -3'
miRNA:   3'- gUGGGA-----GCUGGCGCGCUGCCU-----UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 61284 0.75 0.186161
Target:  5'- aGCUCUucaugucguggUGGCCGCGCGAcCGGAacgACAGCa -3'
miRNA:   3'- gUGGGA-----------GCUGGCGCGCU-GCCU---UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 2447 0.74 0.217138
Target:  5'- -gUCCUCG-CCGCucucggggaagaGCGugGGGACAGCc -3'
miRNA:   3'- guGGGAGCuGGCG------------CGCugCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 12654 0.74 0.228404
Target:  5'- gGCCCUCGGCCGCcuCG-CGGAA-GGCg -3'
miRNA:   3'- gUGGGAGCUGGCGc-GCuGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 34013 0.73 0.25242
Target:  5'- gGCCCUCGcggacacCCGCGuCGACGGccucucuCAGCg -3'
miRNA:   3'- gUGGGAGCu------GGCGC-GCUGCCuu-----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 12179 0.73 0.25242
Target:  5'- aCGCUCUCGaACUGCuggaGCGGCGGGaagaccgccuGCAGCg -3'
miRNA:   3'- -GUGGGAGC-UGGCG----CGCUGCCU----------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 53795 0.73 0.265188
Target:  5'- aGCgCCUCGGCCGCGuUGGCGaGGGCuGUg -3'
miRNA:   3'- gUG-GGAGCUGGCGC-GCUGC-CUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 22849 0.73 0.265188
Target:  5'- --aCCUUGuagaugaaguCCGCGCGGCGGGcCAGCg -3'
miRNA:   3'- gugGGAGCu---------GGCGCGCUGCCUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 35563 0.73 0.271103
Target:  5'- cCGCCUUgccaagggcgcgaCGACCGCGCGACuGGA--GGCa -3'
miRNA:   3'- -GUGGGA-------------GCUGGCGCGCUG-CCUugUCG- -5'
31750 3' -58.1 NC_006938.1 + 35366 0.73 0.271766
Target:  5'- gCGCUCUCGucguCUGUGgGACGGGAguGCu -3'
miRNA:   3'- -GUGGGAGCu---GGCGCgCUGCCUUguCG- -5'
31750 3' -58.1 NC_006938.1 + 11969 0.73 0.271766
Target:  5'- cCACcgCCUCaGCCGCGUGugGGAGCugauccagGGCg -3'
miRNA:   3'- -GUG--GGAGcUGGCGCGCugCCUUG--------UCG- -5'
31750 3' -58.1 NC_006938.1 + 48021 0.73 0.277798
Target:  5'- uCACgCUCGACaagaccuCGgGCGGCGcGGACGGCa -3'
miRNA:   3'- -GUGgGAGCUG-------GCgCGCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 8081 0.72 0.292287
Target:  5'- -uCUCUUGGCCGgGUGGCGGGaagaGCAGUg -3'
miRNA:   3'- guGGGAGCUGGCgCGCUGCCU----UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13460 0.72 0.306628
Target:  5'- aCACCCUCGGCgGCGaCGAUc--GCGGCc -3'
miRNA:   3'- -GUGGGAGCUGgCGC-GCUGccuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 48341 0.72 0.321502
Target:  5'- aACCC-CGGCuCGgGCGGCGGuGACgAGCg -3'
miRNA:   3'- gUGGGaGCUG-GCgCGCUGCC-UUG-UCG- -5'
31750 3' -58.1 NC_006938.1 + 27635 0.71 0.336909
Target:  5'- --gUCUCGGCCGCGCuGGC-GAACGGUg -3'
miRNA:   3'- gugGGAGCUGGCGCG-CUGcCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22368 0.71 0.344812
Target:  5'- aCACCaucggaUgGGCCGCGCGACuGGuGCAGa -3'
miRNA:   3'- -GUGGg-----AgCUGGCGCGCUG-CCuUGUCg -5'
31750 3' -58.1 NC_006938.1 + 25594 0.71 0.344812
Target:  5'- aACCCUCGGCCGUGa-ACGGGuuGCucGCg -3'
miRNA:   3'- gUGGGAGCUGGCGCgcUGCCU--UGu-CG- -5'
31750 3' -58.1 NC_006938.1 + 9949 0.71 0.368475
Target:  5'- aCACUccgcuugauagagCUCGACCGCGCccUGGAguACAGCu -3'
miRNA:   3'- -GUGG-------------GAGCUGGCGCGcuGCCU--UGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.