miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 23667 0.66 0.599104
Target:  5'- --aCCUCGugCcgaagcaGCGCGACGucggccaGGGCGGCa -3'
miRNA:   3'- gugGGAGCugG-------CGCGCUGC-------CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 44107 0.68 0.49818
Target:  5'- cCACCaaCGGCaucaGgGUGACGG-ACAGCa -3'
miRNA:   3'- -GUGGgaGCUGg---CgCGCUGCCuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11075 0.68 0.508177
Target:  5'- --aCCUCGG-CGCGC--UGGAGCGGCa -3'
miRNA:   3'- gugGGAGCUgGCGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 20698 0.67 0.548948
Target:  5'- aACCagggacaGGCCGCGCGACaGAugGGg -3'
miRNA:   3'- gUGGgag----CUGGCGCGCUGcCUugUCg -5'
31750 3' -58.1 NC_006938.1 + 46961 0.67 0.559307
Target:  5'- aCACUCcgcCGACCGC-CGACGaGugGGCg -3'
miRNA:   3'- -GUGGGa--GCUGGCGcGCUGCcUugUCG- -5'
31750 3' -58.1 NC_006938.1 + 33657 0.67 0.568676
Target:  5'- --aCCUCGACCaguggacccagguGCGCGACacccacgaGGGcCAGCa -3'
miRNA:   3'- gugGGAGCUGG-------------CGCGCUG--------CCUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 8354 0.67 0.59068
Target:  5'- gGCCagauCUgGAUCGCgGCGGCGGAcgcGCAGg -3'
miRNA:   3'- gUGG----GAgCUGGCG-CGCUGCCU---UGUCg -5'
31750 3' -58.1 NC_006938.1 + 44873 0.67 0.59068
Target:  5'- cCACCUUggcaCGGCuCcCGCGAcCGGGACAGUc -3'
miRNA:   3'- -GUGGGA----GCUG-GcGCGCU-GCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 51468 0.67 0.59068
Target:  5'- aCAUCCUCG-UCGCGgcCGGagcCGGGGCAGUc -3'
miRNA:   3'- -GUGGGAGCuGGCGC--GCU---GCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 15469 0.68 0.488272
Target:  5'- uGgCCUCGACCaggaGCGggcUGACGcGGGCGGCa -3'
miRNA:   3'- gUgGGAGCUGG----CGC---GCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13641 0.69 0.478458
Target:  5'- -gUCaCUCGGCCGCGCuGACaugcucauGGAgcGCGGCa -3'
miRNA:   3'- guGG-GAGCUGGCGCG-CUG--------CCU--UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 3936 0.69 0.459128
Target:  5'- gACCUacuUCGG-CGUGUGGCGGGAgGGCu -3'
miRNA:   3'- gUGGG---AGCUgGCGCGCUGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 11969 0.73 0.271766
Target:  5'- cCACcgCCUCaGCCGCGUGugGGAGCugauccagGGCg -3'
miRNA:   3'- -GUG--GGAGcUGGCGCGCugCCUUG--------UCG- -5'
31750 3' -58.1 NC_006938.1 + 48021 0.73 0.277798
Target:  5'- uCACgCUCGACaagaccuCGgGCGGCGcGGACGGCa -3'
miRNA:   3'- -GUGgGAGCUG-------GCgCGCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 48341 0.72 0.321502
Target:  5'- aACCC-CGGCuCGgGCGGCGGuGACgAGCg -3'
miRNA:   3'- gUGGGaGCUG-GCgCGCUGCC-UUG-UCG- -5'
31750 3' -58.1 NC_006938.1 + 22368 0.71 0.344812
Target:  5'- aCACCaucggaUgGGCCGCGCGACuGGuGCAGa -3'
miRNA:   3'- -GUGGg-----AgCUGGCGCGCUG-CCuUGUCg -5'
31750 3' -58.1 NC_006938.1 + 18184 0.71 0.369311
Target:  5'- aCGCCCU---CCGCGCGGCcGGAcacCAGCu -3'
miRNA:   3'- -GUGGGAgcuGGCGCGCUG-CCUu--GUCG- -5'
31750 3' -58.1 NC_006938.1 + 51802 0.7 0.377738
Target:  5'- gACCaacCGGCUGCGCGACacagagcaGGAGCuGCa -3'
miRNA:   3'- gUGGga-GCUGGCGCGCUG--------CCUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 32828 0.7 0.421765
Target:  5'- cCGCCaagcUGGCCGCGUGGCucgaGGGCAGCu -3'
miRNA:   3'- -GUGGga--GCUGGCGCGCUGc---CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 27799 0.69 0.440221
Target:  5'- gACCC-CGACaagaacgcguaCGCGUGGCGGAAgAGg -3'
miRNA:   3'- gUGGGaGCUG-----------GCGCGCUGCCUUgUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.