miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 30731 0.66 0.654074
Target:  5'- uGCCCUCGAgCCaCGCGgccagcuugGCGGggUugucGGCc -3'
miRNA:   3'- gUGGGAGCU-GGcGCGC---------UGCCuuG----UCG- -5'
31750 3' -58.1 NC_006938.1 + 45326 0.68 0.508177
Target:  5'- gGCCCUCGuGCCuCGCGAU-GAAguGCu -3'
miRNA:   3'- gUGGGAGC-UGGcGCGCUGcCUUguCG- -5'
31750 3' -58.1 NC_006938.1 + 11719 0.68 0.508177
Target:  5'- cCACCUcgUCGAUgGUGCcACGGAgaguggucuGCAGCu -3'
miRNA:   3'- -GUGGG--AGCUGgCGCGcUGCCU---------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 31718 1.11 0.000534
Target:  5'- aCACCCUCGACCGCGCGACGGAACAGCu -3'
miRNA:   3'- -GUGGGAGCUGGCGCGCUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11256 0.66 0.632923
Target:  5'- cCGCCCU-GGCCGC-CGAUGaGGAUcgAGCc -3'
miRNA:   3'- -GUGGGAgCUGGCGcGCUGC-CUUG--UCG- -5'
31750 3' -58.1 NC_006938.1 + 39808 0.66 0.611769
Target:  5'- gGCCCUCcgucuGACCcucCGgGACGGGucaguuguucGCGGCa -3'
miRNA:   3'- gUGGGAG-----CUGGc--GCgCUGCCU----------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22052 0.67 0.581228
Target:  5'- aCGCCacgucagcagggagCGGCUGCGCGGCGGccugGGCa -3'
miRNA:   3'- -GUGGga------------GCUGGCGCGCUGCCuug-UCG- -5'
31750 3' -58.1 NC_006938.1 + 25068 0.67 0.58018
Target:  5'- aCACUC-CGGCCGUcaggGCGAUGcGGuCAGCg -3'
miRNA:   3'- -GUGGGaGCUGGCG----CGCUGC-CUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 55987 0.67 0.548948
Target:  5'- aCGCCCUCGGCCagGUGCu-UGGc-CAGCg -3'
miRNA:   3'- -GUGGGAGCUGG--CGCGcuGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22411 0.68 0.508177
Target:  5'- ---aCUCGGucCCGCGCGGCgaaGGAGcCAGCg -3'
miRNA:   3'- guggGAGCU--GGCGCGCUG---CCUU-GUCG- -5'
31750 3' -58.1 NC_006938.1 + 29604 0.68 0.528417
Target:  5'- uGCuCCUCG-UUGaucCGGCGGAGCAGCa -3'
miRNA:   3'- gUG-GGAGCuGGCgc-GCUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13969 0.67 0.56972
Target:  5'- gCAUCCUCGGCga-GCGGCuGuAGCAGCg -3'
miRNA:   3'- -GUGGGAGCUGgcgCGCUGcC-UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 35177 0.66 0.643503
Target:  5'- uGCCgggUUGACCGUguaggGCGGCcggaGGGACAGCu -3'
miRNA:   3'- gUGGg--AGCUGGCG-----CGCUG----CCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 43454 0.68 0.518258
Target:  5'- gGCCCaggaGACCaCGCGGCGGAugcCAGa -3'
miRNA:   3'- gUGGGag--CUGGcGCGCUGCCUu--GUCg -5'
31750 3' -58.1 NC_006938.1 + 49610 0.66 0.643503
Target:  5'- uGCUgagCUCGGCCcCGCu-CGGAACGGUg -3'
miRNA:   3'- gUGG---GAGCUGGcGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 49550 0.67 0.573899
Target:  5'- gGCCCgauaugccgacgugcUCGACCGUgucaaggucgucGCucaugaGAUGGAACAGCu -3'
miRNA:   3'- gUGGG---------------AGCUGGCG------------CG------CUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 43164 0.68 0.516235
Target:  5'- aACCCUCuGCUgggGCGUGuagugcuccacuCGGAGCGGCg -3'
miRNA:   3'- gUGGGAGcUGG---CGCGCu-----------GCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 23434 0.68 0.508177
Target:  5'- --aCCUCGGCCGCGacaccCGGCuGAcCGGCg -3'
miRNA:   3'- gugGGAGCUGGCGC-----GCUGcCUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 42728 0.66 0.632923
Target:  5'- cCACCucgcgcuguguCUUGcCCGCGCGGCGG--CGGUa -3'
miRNA:   3'- -GUGG-----------GAGCuGGCGCGCUGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22500 0.66 0.605433
Target:  5'- gACCCggccacggaggaggCGAgUGCGCucccgaGACGcGAACAGCg -3'
miRNA:   3'- gUGGGa-------------GCUgGCGCG------CUGC-CUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.