miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 2447 0.74 0.217138
Target:  5'- -gUCCUCG-CCGCucucggggaagaGCGugGGGACAGCc -3'
miRNA:   3'- guGGGAGCuGGCG------------CGCugCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 3936 0.69 0.459128
Target:  5'- gACCUacuUCGG-CGUGUGGCGGGAgGGCu -3'
miRNA:   3'- gUGGG---AGCUgGCGCGCUGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 4424 0.66 0.643503
Target:  5'- uGCCCUgGgcaaguuuGCCGUGCGcuuugACGGGuccauCAGCg -3'
miRNA:   3'- gUGGGAgC--------UGGCGCGC-----UGCCUu----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 5828 0.67 0.538649
Target:  5'- cCGCCC-CGACCGU--GAUGGAGCucacauGCa -3'
miRNA:   3'- -GUGGGaGCUGGCGcgCUGCCUUGu-----CG- -5'
31750 3' -58.1 NC_006938.1 + 7686 0.68 0.49818
Target:  5'- aGCCCUCGcucGCCuCGaUGAUGGAguccgGCAGCu -3'
miRNA:   3'- gUGGGAGC---UGGcGC-GCUGCCU-----UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 8081 0.72 0.292287
Target:  5'- -uCUCUUGGCCGgGUGGCGGGaagaGCAGUg -3'
miRNA:   3'- guGGGAGCUGGCgCGCUGCCU----UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 8354 0.67 0.59068
Target:  5'- gGCCagauCUgGAUCGCgGCGGCGGAcgcGCAGg -3'
miRNA:   3'- gUGG----GAgCUGGCG-CGCUGCCU---UGUCg -5'
31750 3' -58.1 NC_006938.1 + 9949 0.71 0.368475
Target:  5'- aCACUccgcuugauagagCUCGACCGCGCccUGGAguACAGCu -3'
miRNA:   3'- -GUGG-------------GAGCUGGCGCGcuGCCU--UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 10523 0.68 0.497185
Target:  5'- gCugCCUCcaccguggugccaGACUGCGCGGCGagcGAGCuGCc -3'
miRNA:   3'- -GugGGAG-------------CUGGCGCGCUGC---CUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 10533 0.66 0.626574
Target:  5'- uCACCCUCacggacgaguacauGCCGCuGCuGACGGAcgguccCAGCa -3'
miRNA:   3'- -GUGGGAGc-------------UGGCG-CG-CUGCCUu-----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 11075 0.68 0.508177
Target:  5'- --aCCUCGG-CGCGC--UGGAGCGGCa -3'
miRNA:   3'- gugGGAGCUgGCGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11256 0.66 0.632923
Target:  5'- cCGCCCU-GGCCGC-CGAUGaGGAUcgAGCc -3'
miRNA:   3'- -GUGGGAgCUGGCGcGCUGC-CUUG--UCG- -5'
31750 3' -58.1 NC_006938.1 + 11719 0.68 0.508177
Target:  5'- cCACCUcgUCGAUgGUGCcACGGAgaguggucuGCAGCu -3'
miRNA:   3'- -GUGGG--AGCUGgCGCGcUGCCU---------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11969 0.73 0.271766
Target:  5'- cCACcgCCUCaGCCGCGUGugGGAGCugauccagGGCg -3'
miRNA:   3'- -GUG--GGAGcUGGCGCGCugCCUUG--------UCG- -5'
31750 3' -58.1 NC_006938.1 + 12004 0.69 0.468742
Target:  5'- aACCCg-GACCGCGCccucGAUGGcGGCGGUu -3'
miRNA:   3'- gUGGGagCUGGCGCG----CUGCC-UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 12179 0.73 0.25242
Target:  5'- aCGCUCUCGaACUGCuggaGCGGCGGGaagaccgccuGCAGCg -3'
miRNA:   3'- -GUGGGAGC-UGGCG----CGCUGCCU----------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 12654 0.74 0.228404
Target:  5'- gGCCCUCGGCCGCcuCG-CGGAA-GGCg -3'
miRNA:   3'- gUGGGAGCUGGCGc-GCuGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 13460 0.72 0.306628
Target:  5'- aCACCCUCGGCgGCGaCGAUc--GCGGCc -3'
miRNA:   3'- -GUGGGAGCUGgCGC-GCUGccuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13641 0.69 0.478458
Target:  5'- -gUCaCUCGGCCGCGCuGACaugcucauGGAgcGCGGCa -3'
miRNA:   3'- guGG-GAGCUGGCGCG-CUG--------CCU--UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13969 0.67 0.56972
Target:  5'- gCAUCCUCGGCga-GCGGCuGuAGCAGCg -3'
miRNA:   3'- -GUGGGAGCUGgcgCGCUGcC-UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.