miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 61763 0.69 0.430935
Target:  5'- aGCCCg-GACagggguCGCGCGGCGGu-CGGCa -3'
miRNA:   3'- gUGGGagCUG------GCGCGCUGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 61284 0.75 0.186161
Target:  5'- aGCUCUucaugucguggUGGCCGCGCGAcCGGAacgACAGCa -3'
miRNA:   3'- gUGGGA-----------GCUGGCGCGCU-GCCU---UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 60856 0.71 0.369311
Target:  5'- gACCCUuguuuacaCGAgCGCcCGGCGGGACAGg -3'
miRNA:   3'- gUGGGA--------GCUgGCGcGCUGCCUUGUCg -5'
31750 3' -58.1 NC_006938.1 + 56748 0.69 0.468742
Target:  5'- aGCCCUCGGCCuuGuCGAcCGuGGACAGg -3'
miRNA:   3'- gUGGGAGCUGGcgC-GCU-GC-CUUGUCg -5'
31750 3' -58.1 NC_006938.1 + 55987 0.67 0.548948
Target:  5'- aCGCCCUCGGCCagGUGCu-UGGc-CAGCg -3'
miRNA:   3'- -GUGGGAGCUGG--CGCGcuGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 53795 0.73 0.265188
Target:  5'- aGCgCCUCGGCCGCGuUGGCGaGGGCuGUg -3'
miRNA:   3'- gUG-GGAGCUGGCGC-GCUGC-CUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 53100 0.66 0.622342
Target:  5'- aCGCCCUUGACauCaCGGCGGaGugGGCg -3'
miRNA:   3'- -GUGGGAGCUGgcGcGCUGCC-UugUCG- -5'
31750 3' -58.1 NC_006938.1 + 51802 0.7 0.377738
Target:  5'- gACCaacCGGCUGCGCGACacagagcaGGAGCuGCa -3'
miRNA:   3'- gUGGga-GCUGGCGCGCUG--------CCUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 51468 0.67 0.59068
Target:  5'- aCAUCCUCG-UCGCGgcCGGagcCGGGGCAGUc -3'
miRNA:   3'- -GUGGGAGCuGGCGC--GCU---GCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 49610 0.66 0.643503
Target:  5'- uGCUgagCUCGGCCcCGCu-CGGAACGGUg -3'
miRNA:   3'- gUGG---GAGCUGGcGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 49550 0.67 0.573899
Target:  5'- gGCCCgauaugccgacgugcUCGACCGUgucaaggucgucGCucaugaGAUGGAACAGCu -3'
miRNA:   3'- gUGGG---------------AGCUGGCG------------CG------CUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 48341 0.72 0.321502
Target:  5'- aACCC-CGGCuCGgGCGGCGGuGACgAGCg -3'
miRNA:   3'- gUGGGaGCUG-GCgCGCUGCC-UUG-UCG- -5'
31750 3' -58.1 NC_006938.1 + 48021 0.73 0.277798
Target:  5'- uCACgCUCGACaagaccuCGgGCGGCGcGGACGGCa -3'
miRNA:   3'- -GUGgGAGCUG-------GCgCGCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 46961 0.67 0.559307
Target:  5'- aCACUCcgcCGACCGC-CGACGaGugGGCg -3'
miRNA:   3'- -GUGGGa--GCUGGCGcGCUGCcUugUCG- -5'
31750 3' -58.1 NC_006938.1 + 46282 0.76 0.159148
Target:  5'- gGCCUUggcaaUGGCCGCGCGGCGGAcguugAUGGCg -3'
miRNA:   3'- gUGGGA-----GCUGGCGCGCUGCCU-----UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 45326 0.68 0.508177
Target:  5'- gGCCCUCGuGCCuCGCGAU-GAAguGCu -3'
miRNA:   3'- gUGGGAGC-UGGcGCGCUGcCUUguCG- -5'
31750 3' -58.1 NC_006938.1 + 44873 0.67 0.59068
Target:  5'- cCACCUUggcaCGGCuCcCGCGAcCGGGACAGUc -3'
miRNA:   3'- -GUGGGA----GCUG-GcGCGCU-GCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 44107 0.68 0.49818
Target:  5'- cCACCaaCGGCaucaGgGUGACGG-ACAGCa -3'
miRNA:   3'- -GUGGgaGCUGg---CgCGCUGCCuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 43454 0.68 0.518258
Target:  5'- gGCCCaggaGACCaCGCGGCGGAugcCAGa -3'
miRNA:   3'- gUGGGag--CUGGcGCGCUGCCUu--GUCg -5'
31750 3' -58.1 NC_006938.1 + 43164 0.68 0.516235
Target:  5'- aACCCUCuGCUgggGCGUGuagugcuccacuCGGAGCGGCg -3'
miRNA:   3'- gUGGGAGcUGG---CGCGCu-----------GCCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.