Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31750 | 3' | -58.1 | NC_006938.1 | + | 14070 | 0.68 | 0.487287 |
Target: 5'- -uUCCUUGAUCGCGaaGACGGugucgucGACGGCg -3' miRNA: 3'- guGGGAGCUGGCGCg-CUGCC-------UUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 15469 | 0.68 | 0.488272 |
Target: 5'- uGgCCUCGACCaggaGCGggcUGACGcGGGCGGCa -3' miRNA: 3'- gUgGGAGCUGG----CGC---GCUGC-CUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 17811 | 0.66 | 0.654074 |
Target: 5'- gACCCUcaugaucgaggCGGCC-CGCGccuauggcauGCGGAaggACAGCg -3' miRNA: 3'- gUGGGA-----------GCUGGcGCGC----------UGCCU---UGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 18184 | 0.71 | 0.369311 |
Target: 5'- aCGCCCU---CCGCGCGGCcGGAcacCAGCu -3' miRNA: 3'- -GUGGGAgcuGGCGCGCUG-CCUu--GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 20698 | 0.67 | 0.548948 |
Target: 5'- aACCagggacaGGCCGCGCGACaGAugGGg -3' miRNA: 3'- gUGGgag----CUGGCGCGCUGcCUugUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 21655 | 0.66 | 0.632923 |
Target: 5'- --aCgUgGGCCGCGCG-CGGGucCAGCu -3' miRNA: 3'- gugGgAgCUGGCGCGCuGCCUu-GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 22052 | 0.67 | 0.581228 |
Target: 5'- aCGCCacgucagcagggagCGGCUGCGCGGCGGccugGGCa -3' miRNA: 3'- -GUGGga------------GCUGGCGCGCUGCCuug-UCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 22368 | 0.71 | 0.344812 |
Target: 5'- aCACCaucggaUgGGCCGCGCGACuGGuGCAGa -3' miRNA: 3'- -GUGGg-----AgCUGGCGCGCUG-CCuUGUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 22411 | 0.68 | 0.508177 |
Target: 5'- ---aCUCGGucCCGCGCGGCgaaGGAGcCAGCg -3' miRNA: 3'- guggGAGCU--GGCGCGCUG---CCUU-GUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 22500 | 0.66 | 0.605433 |
Target: 5'- gACCCggccacggaggaggCGAgUGCGCucccgaGACGcGAACAGCg -3' miRNA: 3'- gUGGGa-------------GCUgGCGCG------CUGC-CUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 22849 | 0.73 | 0.265188 |
Target: 5'- --aCCUUGuagaugaaguCCGCGCGGCGGGcCAGCg -3' miRNA: 3'- gugGGAGCu---------GGCGCGCUGCCUuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 23434 | 0.68 | 0.508177 |
Target: 5'- --aCCUCGGCCGCGacaccCGGCuGAcCGGCg -3' miRNA: 3'- gugGGAGCUGGCGC-----GCUGcCUuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 23667 | 0.66 | 0.599104 |
Target: 5'- --aCCUCGugCcgaagcaGCGCGACGucggccaGGGCGGCa -3' miRNA: 3'- gugGGAGCugG-------CGCGCUGC-------CUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 24372 | 0.66 | 0.611769 |
Target: 5'- gCACCCUC-AgCGCGUGuccauccUGGAGCAGg -3' miRNA: 3'- -GUGGGAGcUgGCGCGCu------GCCUUGUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 25068 | 0.67 | 0.58018 |
Target: 5'- aCACUC-CGGCCGUcaggGCGAUGcGGuCAGCg -3' miRNA: 3'- -GUGGGaGCUGGCG----CGCUGC-CUuGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 25594 | 0.71 | 0.344812 |
Target: 5'- aACCCUCGGCCGUGa-ACGGGuuGCucGCg -3' miRNA: 3'- gUGGGAGCUGGCGCgcUGCCU--UGu-CG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 26814 | 0.66 | 0.632923 |
Target: 5'- gCACUCUCGugGCCGUcaaGGCGGucaugAACGGCa -3' miRNA: 3'- -GUGGGAGC--UGGCGcg-CUGCC-----UUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 27635 | 0.71 | 0.336909 |
Target: 5'- --gUCUCGGCCGCGCuGGC-GAACGGUg -3' miRNA: 3'- gugGGAGCUGGCGCG-CUGcCUUGUCG- -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 27799 | 0.69 | 0.440221 |
Target: 5'- gACCC-CGACaagaacgcguaCGCGUGGCGGAAgAGg -3' miRNA: 3'- gUGGGaGCUG-----------GCGCGCUGCCUUgUCg -5' |
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31750 | 3' | -58.1 | NC_006938.1 | + | 29248 | 0.66 | 0.622342 |
Target: 5'- aACCUgcacgaggcaaUCGGCCGCGCcguuuGCGGc-CAGCg -3' miRNA: 3'- gUGGG-----------AGCUGGCGCGc----UGCCuuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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