miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 18184 0.71 0.369311
Target:  5'- aCGCCCU---CCGCGCGGCcGGAcacCAGCu -3'
miRNA:   3'- -GUGGGAgcuGGCGCGCUG-CCUu--GUCG- -5'
31750 3' -58.1 NC_006938.1 + 60856 0.71 0.369311
Target:  5'- gACCCUuguuuacaCGAgCGCcCGGCGGGACAGg -3'
miRNA:   3'- gUGGGA--------GCUgGCGcGCUGCCUUGUCg -5'
31750 3' -58.1 NC_006938.1 + 51802 0.7 0.377738
Target:  5'- gACCaacCGGCUGCGCGACacagagcaGGAGCuGCa -3'
miRNA:   3'- gUGGga-GCUGGCGCGCUG--------CCUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 32828 0.7 0.421765
Target:  5'- cCGCCaagcUGGCCGCGUGGCucgaGGGCAGCu -3'
miRNA:   3'- -GUGGga--GCUGGCGCGCUGc---CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 61763 0.69 0.430935
Target:  5'- aGCCCg-GACagggguCGCGCGGCGGu-CGGCa -3'
miRNA:   3'- gUGGGagCUG------GCGCGCUGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 27799 0.69 0.440221
Target:  5'- gACCC-CGACaagaacgcguaCGCGUGGCGGAAgAGg -3'
miRNA:   3'- gUGGGaGCUG-----------GCGCGCUGCCUUgUCg -5'
31750 3' -58.1 NC_006938.1 + 36586 0.69 0.449619
Target:  5'- aCACCCacUUGuaACCGCGC--CGGGGCAGUg -3'
miRNA:   3'- -GUGGG--AGC--UGGCGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 30836 0.69 0.449619
Target:  5'- uGCCCUUGAUgGCcacGCGGCaGAGCuGCu -3'
miRNA:   3'- gUGGGAGCUGgCG---CGCUGcCUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 3936 0.69 0.459128
Target:  5'- gACCUacuUCGG-CGUGUGGCGGGAgGGCu -3'
miRNA:   3'- gUGGG---AGCUgGCGCGCUGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 12004 0.69 0.468742
Target:  5'- aACCCg-GACCGCGCccucGAUGGcGGCGGUu -3'
miRNA:   3'- gUGGGagCUGGCGCG----CUGCC-UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 56748 0.69 0.468742
Target:  5'- aGCCCUCGGCCuuGuCGAcCGuGGACAGg -3'
miRNA:   3'- gUGGGAGCUGGcgC-GCU-GC-CUUGUCg -5'
31750 3' -58.1 NC_006938.1 + 13641 0.69 0.478458
Target:  5'- -gUCaCUCGGCCGCGCuGACaugcucauGGAgcGCGGCa -3'
miRNA:   3'- guGG-GAGCUGGCGCG-CUG--------CCU--UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 14070 0.68 0.487287
Target:  5'- -uUCCUUGAUCGCGaaGACGGugucgucGACGGCg -3'
miRNA:   3'- guGGGAGCUGGCGCg-CUGCC-------UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 15469 0.68 0.488272
Target:  5'- uGgCCUCGACCaggaGCGggcUGACGcGGGCGGCa -3'
miRNA:   3'- gUgGGAGCUGG----CGC---GCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 10523 0.68 0.497185
Target:  5'- gCugCCUCcaccguggugccaGACUGCGCGGCGagcGAGCuGCc -3'
miRNA:   3'- -GugGGAG-------------CUGGCGCGCUGC---CUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 7686 0.68 0.49818
Target:  5'- aGCCCUCGcucGCCuCGaUGAUGGAguccgGCAGCu -3'
miRNA:   3'- gUGGGAGC---UGGcGC-GCUGCCU-----UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 44107 0.68 0.49818
Target:  5'- cCACCaaCGGCaucaGgGUGACGG-ACAGCa -3'
miRNA:   3'- -GUGGgaGCUGg---CgCGCUGCCuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 45326 0.68 0.508177
Target:  5'- gGCCCUCGuGCCuCGCGAU-GAAguGCu -3'
miRNA:   3'- gUGGGAGC-UGGcGCGCUGcCUUguCG- -5'
31750 3' -58.1 NC_006938.1 + 11719 0.68 0.508177
Target:  5'- cCACCUcgUCGAUgGUGCcACGGAgaguggucuGCAGCu -3'
miRNA:   3'- -GUGGG--AGCUGgCGCGcUGCCU---------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11075 0.68 0.508177
Target:  5'- --aCCUCGG-CGCGC--UGGAGCGGCa -3'
miRNA:   3'- gugGGAGCUgGCGCGcuGCCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.