miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 22368 0.71 0.344812
Target:  5'- aCACCaucggaUgGGCCGCGCGACuGGuGCAGa -3'
miRNA:   3'- -GUGGg-----AgCUGGCGCGCUG-CCuUGUCg -5'
31750 3' -58.1 NC_006938.1 + 18184 0.71 0.369311
Target:  5'- aCGCCCU---CCGCGCGGCcGGAcacCAGCu -3'
miRNA:   3'- -GUGGGAgcuGGCGCGCUG-CCUu--GUCG- -5'
31750 3' -58.1 NC_006938.1 + 51802 0.7 0.377738
Target:  5'- gACCaacCGGCUGCGCGACacagagcaGGAGCuGCa -3'
miRNA:   3'- gUGGga-GCUGGCGCGCUG--------CCUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 32828 0.7 0.421765
Target:  5'- cCGCCaagcUGGCCGCGUGGCucgaGGGCAGCu -3'
miRNA:   3'- -GUGGga--GCUGGCGCGCUGc---CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11075 0.68 0.508177
Target:  5'- --aCCUCGG-CGCGC--UGGAGCGGCa -3'
miRNA:   3'- gugGGAGCUgGCGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 44107 0.68 0.49818
Target:  5'- cCACCaaCGGCaucaGgGUGACGG-ACAGCa -3'
miRNA:   3'- -GUGGgaGCUGg---CgCGCUGCCuUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 15469 0.68 0.488272
Target:  5'- uGgCCUCGACCaggaGCGggcUGACGcGGGCGGCa -3'
miRNA:   3'- gUgGGAGCUGG----CGC---GCUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 13641 0.69 0.478458
Target:  5'- -gUCaCUCGGCCGCGCuGACaugcucauGGAgcGCGGCa -3'
miRNA:   3'- guGG-GAGCUGGCGCG-CUG--------CCU--UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 3936 0.69 0.459128
Target:  5'- gACCUacuUCGG-CGUGUGGCGGGAgGGCu -3'
miRNA:   3'- gUGGG---AGCUgGCGCGCUGCCUUgUCG- -5'
31750 3' -58.1 NC_006938.1 + 27799 0.69 0.440221
Target:  5'- gACCC-CGACaagaacgcguaCGCGUGGCGGAAgAGg -3'
miRNA:   3'- gUGGGaGCUG-----------GCGCGCUGCCUUgUCg -5'
31750 3' -58.1 NC_006938.1 + 49550 0.67 0.573899
Target:  5'- gGCCCgauaugccgacgugcUCGACCGUgucaaggucgucGCucaugaGAUGGAACAGCu -3'
miRNA:   3'- gUGGG---------------AGCUGGCG------------CG------CUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 25068 0.67 0.58018
Target:  5'- aCACUC-CGGCCGUcaggGCGAUGcGGuCAGCg -3'
miRNA:   3'- -GUGGGaGCUGGCG----CGCUGC-CUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 22052 0.67 0.581228
Target:  5'- aCGCCacgucagcagggagCGGCUGCGCGGCGGccugGGCa -3'
miRNA:   3'- -GUGGga------------GCUGGCGCGCUGCCuug-UCG- -5'
31750 3' -58.1 NC_006938.1 + 22500 0.66 0.605433
Target:  5'- gACCCggccacggaggaggCGAgUGCGCucccgaGACGcGAACAGCg -3'
miRNA:   3'- gUGGGa-------------GCUgGCGCG------CUGC-CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 39808 0.66 0.611769
Target:  5'- gGCCCUCcgucuGACCcucCGgGACGGGucaguuguucGCGGCa -3'
miRNA:   3'- gUGGGAG-----CUGGc--GCgCUGCCU----------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 11256 0.66 0.632923
Target:  5'- cCGCCCU-GGCCGC-CGAUGaGGAUcgAGCc -3'
miRNA:   3'- -GUGGGAgCUGGCGcGCUGC-CUUG--UCG- -5'
31750 3' -58.1 NC_006938.1 + 42728 0.66 0.632923
Target:  5'- cCACCucgcgcuguguCUUGcCCGCGCGGCGG--CGGUa -3'
miRNA:   3'- -GUGG-----------GAGCuGGCGCGCUGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 49610 0.66 0.643503
Target:  5'- uGCUgagCUCGGCCcCGCu-CGGAACGGUg -3'
miRNA:   3'- gUGG---GAGCUGGcGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 35177 0.66 0.643503
Target:  5'- uGCCgggUUGACCGUguaggGCGGCcggaGGGACAGCu -3'
miRNA:   3'- gUGGg--AGCUGGCG-----CGCUG----CCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 31718 1.11 0.000534
Target:  5'- aCACCCUCGACCGCGCGACGGAACAGCu -3'
miRNA:   3'- -GUGGGAGCUGGCGCGCUGCCUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.