miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31766 5' -61.7 NC_006938.1 + 17181 0.66 0.481409
Target:  5'- cGGAUGagguaGUcgaUCG-CACCGCCGUCCGc- -3'
miRNA:   3'- -CCUGCg----CG---AGCaGUGGCGGCGGGCuc -5'
31766 5' -61.7 NC_006938.1 + 28823 0.66 0.481409
Target:  5'- cGACGCGCacgGUCAgUGCCucGCCUGAc -3'
miRNA:   3'- cCUGCGCGag-CAGUgGCGG--CGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 18256 0.66 0.471917
Target:  5'- aGGGCcacuGCGag-GUgACCGCCGCCCuGGGc -3'
miRNA:   3'- -CCUG----CGCgagCAgUGGCGGCGGG-CUC- -5'
31766 5' -61.7 NC_006938.1 + 49993 0.66 0.462521
Target:  5'- cGGcCGCGCUCGguccaACUGgaUCGCCCGuGu -3'
miRNA:   3'- -CCuGCGCGAGCag---UGGC--GGCGGGCuC- -5'
31766 5' -61.7 NC_006938.1 + 16990 0.66 0.453224
Target:  5'- cGGACGacgaGUUCGccauUCGCaaGCUGCUCGAGg -3'
miRNA:   3'- -CCUGCg---CGAGC----AGUGg-CGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 37500 0.66 0.439472
Target:  5'- uGGACaagauccccgaGCUCGagGCCGCCGCCgcuggcaagcuggaCGAGg -3'
miRNA:   3'- -CCUGcg---------CGAGCagUGGCGGCGG--------------GCUC- -5'
31766 5' -61.7 NC_006938.1 + 39276 0.66 0.434942
Target:  5'- uGGAgGCGCUUGUUGCCGUCcaugaGCagCGGGu -3'
miRNA:   3'- -CCUgCGCGAGCAGUGGCGG-----CGg-GCUC- -5'
31766 5' -61.7 NC_006938.1 + 60916 0.66 0.432236
Target:  5'- cGGAC-C-CUCGUCGCCGUgGaggccgcacucgauCCCGAGg -3'
miRNA:   3'- -CCUGcGcGAGCAGUGGCGgC--------------GGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 58190 0.67 0.417093
Target:  5'- cGugGCGCUCGUCgggucucccacgACCaaCGUCUGGGa -3'
miRNA:   3'- cCugCGCGAGCAG------------UGGcgGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 205 0.67 0.408337
Target:  5'- uGGGCGaccgGCUC---GCCGCCGCCCu-- -3'
miRNA:   3'- -CCUGCg---CGAGcagUGGCGGCGGGcuc -5'
31766 5' -61.7 NC_006938.1 + 6344 0.67 0.391176
Target:  5'- cGGugGCGguCUCGUCGCUGUCcacgaGCCgGAc -3'
miRNA:   3'- -CCugCGC--GAGCAGUGGCGG-----CGGgCUc -5'
31766 5' -61.7 NC_006938.1 + 15528 0.67 0.382774
Target:  5'- uGAUGC---CGUC-CgCGCCGCCCGAGg -3'
miRNA:   3'- cCUGCGcgaGCAGuG-GCGGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 50571 0.67 0.382774
Target:  5'- gGGugGCcaGUUCuugggGUCACgaGaCCGCCCGAGg -3'
miRNA:   3'- -CCugCG--CGAG-----CAGUGg-C-GGCGGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 49528 0.67 0.382774
Target:  5'- cGGACGCGaUUGUUccccUCGCgGCCCGAu -3'
miRNA:   3'- -CCUGCGCgAGCAGu---GGCGgCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 10727 0.68 0.374492
Target:  5'- uGGaACGUGg-CGUUGCUGCCGUCCGuGg -3'
miRNA:   3'- -CC-UGCGCgaGCAGUGGCGGCGGGCuC- -5'
31766 5' -61.7 NC_006938.1 + 28074 0.68 0.366333
Target:  5'- aGAUGCGCUgGcgCACC-CgGCCCGAc -3'
miRNA:   3'- cCUGCGCGAgCa-GUGGcGgCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 26414 0.69 0.325167
Target:  5'- uGGCGCGaCUCGUuccacaaucucuggCACuCGCCGaCCGAGu -3'
miRNA:   3'- cCUGCGC-GAGCA--------------GUG-GCGGCgGGCUC- -5'
31766 5' -61.7 NC_006938.1 + 10689 0.69 0.319994
Target:  5'- aGGGCGCaaucCUCGcCACCGagCGCCUGAc -3'
miRNA:   3'- -CCUGCGc---GAGCaGUGGCg-GCGGGCUc -5'
31766 5' -61.7 NC_006938.1 + 50100 0.69 0.312711
Target:  5'- aGGcCGCGaUCGUCGCCGCCGa--GGGu -3'
miRNA:   3'- -CCuGCGCgAGCAGUGGCGGCgggCUC- -5'
31766 5' -61.7 NC_006938.1 + 57069 0.69 0.312711
Target:  5'- -aGCGCGCUCGgCAUUGCCGUcuucgUCGAGc -3'
miRNA:   3'- ccUGCGCGAGCaGUGGCGGCG-----GGCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.