Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31766 | 5' | -61.7 | NC_006938.1 | + | 17181 | 0.66 | 0.481409 |
Target: 5'- cGGAUGagguaGUcgaUCG-CACCGCCGUCCGc- -3' miRNA: 3'- -CCUGCg----CG---AGCaGUGGCGGCGGGCuc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 28823 | 0.66 | 0.481409 |
Target: 5'- cGACGCGCacgGUCAgUGCCucGCCUGAc -3' miRNA: 3'- cCUGCGCGag-CAGUgGCGG--CGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 18256 | 0.66 | 0.471917 |
Target: 5'- aGGGCcacuGCGag-GUgACCGCCGCCCuGGGc -3' miRNA: 3'- -CCUG----CGCgagCAgUGGCGGCGGG-CUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 49993 | 0.66 | 0.462521 |
Target: 5'- cGGcCGCGCUCGguccaACUGgaUCGCCCGuGu -3' miRNA: 3'- -CCuGCGCGAGCag---UGGC--GGCGGGCuC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 16990 | 0.66 | 0.453224 |
Target: 5'- cGGACGacgaGUUCGccauUCGCaaGCUGCUCGAGg -3' miRNA: 3'- -CCUGCg---CGAGC----AGUGg-CGGCGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 37500 | 0.66 | 0.439472 |
Target: 5'- uGGACaagauccccgaGCUCGagGCCGCCGCCgcuggcaagcuggaCGAGg -3' miRNA: 3'- -CCUGcg---------CGAGCagUGGCGGCGG--------------GCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 39276 | 0.66 | 0.434942 |
Target: 5'- uGGAgGCGCUUGUUGCCGUCcaugaGCagCGGGu -3' miRNA: 3'- -CCUgCGCGAGCAGUGGCGG-----CGg-GCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 60916 | 0.66 | 0.432236 |
Target: 5'- cGGAC-C-CUCGUCGCCGUgGaggccgcacucgauCCCGAGg -3' miRNA: 3'- -CCUGcGcGAGCAGUGGCGgC--------------GGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 58190 | 0.67 | 0.417093 |
Target: 5'- cGugGCGCUCGUCgggucucccacgACCaaCGUCUGGGa -3' miRNA: 3'- cCugCGCGAGCAG------------UGGcgGCGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 205 | 0.67 | 0.408337 |
Target: 5'- uGGGCGaccgGCUC---GCCGCCGCCCu-- -3' miRNA: 3'- -CCUGCg---CGAGcagUGGCGGCGGGcuc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 6344 | 0.67 | 0.391176 |
Target: 5'- cGGugGCGguCUCGUCGCUGUCcacgaGCCgGAc -3' miRNA: 3'- -CCugCGC--GAGCAGUGGCGG-----CGGgCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 15528 | 0.67 | 0.382774 |
Target: 5'- uGAUGC---CGUC-CgCGCCGCCCGAGg -3' miRNA: 3'- cCUGCGcgaGCAGuG-GCGGCGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 50571 | 0.67 | 0.382774 |
Target: 5'- gGGugGCcaGUUCuugggGUCACgaGaCCGCCCGAGg -3' miRNA: 3'- -CCugCG--CGAG-----CAGUGg-C-GGCGGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 49528 | 0.67 | 0.382774 |
Target: 5'- cGGACGCGaUUGUUccccUCGCgGCCCGAu -3' miRNA: 3'- -CCUGCGCgAGCAGu---GGCGgCGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 10727 | 0.68 | 0.374492 |
Target: 5'- uGGaACGUGg-CGUUGCUGCCGUCCGuGg -3' miRNA: 3'- -CC-UGCGCgaGCAGUGGCGGCGGGCuC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 28074 | 0.68 | 0.366333 |
Target: 5'- aGAUGCGCUgGcgCACC-CgGCCCGAc -3' miRNA: 3'- cCUGCGCGAgCa-GUGGcGgCGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 26414 | 0.69 | 0.325167 |
Target: 5'- uGGCGCGaCUCGUuccacaaucucuggCACuCGCCGaCCGAGu -3' miRNA: 3'- cCUGCGC-GAGCA--------------GUG-GCGGCgGGCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 10689 | 0.69 | 0.319994 |
Target: 5'- aGGGCGCaaucCUCGcCACCGagCGCCUGAc -3' miRNA: 3'- -CCUGCGc---GAGCaGUGGCg-GCGGGCUc -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 50100 | 0.69 | 0.312711 |
Target: 5'- aGGcCGCGaUCGUCGCCGCCGa--GGGu -3' miRNA: 3'- -CCuGCGCgAGCAGUGGCGGCgggCUC- -5' |
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31766 | 5' | -61.7 | NC_006938.1 | + | 57069 | 0.69 | 0.312711 |
Target: 5'- -aGCGCGCUCGgCAUUGCCGUcuucgUCGAGc -3' miRNA: 3'- ccUGCGCGAGCaGUGGCGGCG-----GGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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