Results 1 - 20 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31771 | 3' | -58 | NC_006938.1 | + | 52444 | 0.66 | 0.644142 |
Target: 5'- gGucGGUGUCgggcgagaACCACuCGCCUCCuGCCa -3' miRNA: 3'- gCuuCUACGG--------UGGUG-GCGGAGG-UGGc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 11342 | 0.68 | 0.477851 |
Target: 5'- -aAAGA-GCC-CU-CCGCCUCCACCa -3' miRNA: 3'- gcUUCUaCGGuGGuGGCGGAGGUGGc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 15153 | 0.69 | 0.458387 |
Target: 5'- aGGAGGUGUUguagGCCgugGCCGCCUCgAUCGu -3' miRNA: 3'- gCUUCUACGG----UGG---UGGCGGAGgUGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 11373 | 1.08 | 0.000827 |
Target: 5'- cCGAAGAUGCCACCACCGCCUCCACCGc -3' miRNA: 3'- -GCUUCUACGGUGGUGGCGGAGGUGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 19295 | 0.66 | 0.612164 |
Target: 5'- aGAGGAgcCCACCGCCaCCUCCcuugaagaggGCCu -3' miRNA: 3'- gCUUCUacGGUGGUGGcGGAGG----------UGGc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 17473 | 0.66 | 0.612164 |
Target: 5'- gGggGAUGUCguuuccggccguGCCGuCUGCCUgggCCACCa -3' miRNA: 3'- gCuuCUACGG------------UGGU-GGCGGA---GGUGGc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 267 | 0.66 | 0.601526 |
Target: 5'- gGAGGcaccgcGUGCCACCAgCUGCUUCUgucgugccagcgACCGa -3' miRNA: 3'- gCUUC------UACGGUGGU-GGCGGAGG------------UGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 31899 | 0.66 | 0.600463 |
Target: 5'- gGAAcuugGCCGCCGCCcugucgucaaagcGCCUCUGCCc -3' miRNA: 3'- gCUUcua-CGGUGGUGG-------------CGGAGGUGGc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 52884 | 0.67 | 0.559297 |
Target: 5'- gCGAGGAUuGCCccucgACCACCuuGCCgUCCuCCGu -3' miRNA: 3'- -GCUUCUA-CGG-----UGGUGG--CGG-AGGuGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 10431 | 0.68 | 0.496712 |
Target: 5'- uGggGAUGUucggcgCGCCAacugcguCCGCCcacUCCGCCGu -3' miRNA: 3'- gCuuCUACG------GUGGU-------GGCGG---AGGUGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 24382 | 0.67 | 0.548859 |
Target: 5'- gGGAG-UGCagggucucagaACCACCGCCguugCCugCGg -3' miRNA: 3'- gCUUCuACGg----------UGGUGGCGGa---GGugGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 53721 | 0.67 | 0.56979 |
Target: 5'- aGGAGuUGCaCGCCAgCGUCUCCaggACCu -3' miRNA: 3'- gCUUCuACG-GUGGUgGCGGAGG---UGGc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 44206 | 0.66 | 0.644142 |
Target: 5'- gGAAGAggaaCACCuuGCCcuCCUCCGCCGc -3' miRNA: 3'- gCUUCUacg-GUGG--UGGc-GGAGGUGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 55176 | 0.67 | 0.542625 |
Target: 5'- uGAGGAgguacgucuccccgGCguCCugCGCgUCCGCCGc -3' miRNA: 3'- gCUUCUa-------------CGguGGugGCGgAGGUGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 59786 | 0.66 | 0.633481 |
Target: 5'- gGgcGAUGCCACCcUUGCCaCCGCg- -3' miRNA: 3'- gCuuCUACGGUGGuGGCGGaGGUGgc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 15643 | 0.67 | 0.56979 |
Target: 5'- ----cGUGUCAUCACCGCCUaugaagaugaacUCGCCGg -3' miRNA: 3'- gcuucUACGGUGGUGGCGGA------------GGUGGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 42173 | 0.68 | 0.517938 |
Target: 5'- cCGAGGGgcuUGUCACCcggACCGgCUCgGCCa -3' miRNA: 3'- -GCUUCU---ACGGUGG---UGGCgGAGgUGGc -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 790 | 0.68 | 0.468067 |
Target: 5'- gCGGAGGucuccaguguUGCCAgCCggugugGCCGCCUCCGugcCCGa -3' miRNA: 3'- -GCUUCU----------ACGGU-GG------UGGCGGAGGU---GGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 25950 | 0.66 | 0.633481 |
Target: 5'- uGAGGGcUGCCACCugUcgCUCCAgCGg -3' miRNA: 3'- gCUUCU-ACGGUGGugGcgGAGGUgGC- -5' |
|||||||
31771 | 3' | -58 | NC_006938.1 | + | 56398 | 0.66 | 0.601526 |
Target: 5'- uGAGcucgGCCAuUCGCCGUCUCCAgCGg -3' miRNA: 3'- gCUUcua-CGGU-GGUGGCGGAGGUgGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home