miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 52444 0.66 0.644142
Target:  5'- gGucGGUGUCgggcgagaACCACuCGCCUCCuGCCa -3'
miRNA:   3'- gCuuCUACGG--------UGGUG-GCGGAGG-UGGc -5'
31771 3' -58 NC_006938.1 + 11342 0.68 0.477851
Target:  5'- -aAAGA-GCC-CU-CCGCCUCCACCa -3'
miRNA:   3'- gcUUCUaCGGuGGuGGCGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 15153 0.69 0.458387
Target:  5'- aGGAGGUGUUguagGCCgugGCCGCCUCgAUCGu -3'
miRNA:   3'- gCUUCUACGG----UGG---UGGCGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 11373 1.08 0.000827
Target:  5'- cCGAAGAUGCCACCACCGCCUCCACCGc -3'
miRNA:   3'- -GCUUCUACGGUGGUGGCGGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 19295 0.66 0.612164
Target:  5'- aGAGGAgcCCACCGCCaCCUCCcuugaagaggGCCu -3'
miRNA:   3'- gCUUCUacGGUGGUGGcGGAGG----------UGGc -5'
31771 3' -58 NC_006938.1 + 17473 0.66 0.612164
Target:  5'- gGggGAUGUCguuuccggccguGCCGuCUGCCUgggCCACCa -3'
miRNA:   3'- gCuuCUACGG------------UGGU-GGCGGA---GGUGGc -5'
31771 3' -58 NC_006938.1 + 267 0.66 0.601526
Target:  5'- gGAGGcaccgcGUGCCACCAgCUGCUUCUgucgugccagcgACCGa -3'
miRNA:   3'- gCUUC------UACGGUGGU-GGCGGAGG------------UGGC- -5'
31771 3' -58 NC_006938.1 + 31899 0.66 0.600463
Target:  5'- gGAAcuugGCCGCCGCCcugucgucaaagcGCCUCUGCCc -3'
miRNA:   3'- gCUUcua-CGGUGGUGG-------------CGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 52884 0.67 0.559297
Target:  5'- gCGAGGAUuGCCccucgACCACCuuGCCgUCCuCCGu -3'
miRNA:   3'- -GCUUCUA-CGG-----UGGUGG--CGG-AGGuGGC- -5'
31771 3' -58 NC_006938.1 + 10431 0.68 0.496712
Target:  5'- uGggGAUGUucggcgCGCCAacugcguCCGCCcacUCCGCCGu -3'
miRNA:   3'- gCuuCUACG------GUGGU-------GGCGG---AGGUGGC- -5'
31771 3' -58 NC_006938.1 + 24382 0.67 0.548859
Target:  5'- gGGAG-UGCagggucucagaACCACCGCCguugCCugCGg -3'
miRNA:   3'- gCUUCuACGg----------UGGUGGCGGa---GGugGC- -5'
31771 3' -58 NC_006938.1 + 53721 0.67 0.56979
Target:  5'- aGGAGuUGCaCGCCAgCGUCUCCaggACCu -3'
miRNA:   3'- gCUUCuACG-GUGGUgGCGGAGG---UGGc -5'
31771 3' -58 NC_006938.1 + 44206 0.66 0.644142
Target:  5'- gGAAGAggaaCACCuuGCCcuCCUCCGCCGc -3'
miRNA:   3'- gCUUCUacg-GUGG--UGGc-GGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 55176 0.67 0.542625
Target:  5'- uGAGGAgguacgucuccccgGCguCCugCGCgUCCGCCGc -3'
miRNA:   3'- gCUUCUa-------------CGguGGugGCGgAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 59786 0.66 0.633481
Target:  5'- gGgcGAUGCCACCcUUGCCaCCGCg- -3'
miRNA:   3'- gCuuCUACGGUGGuGGCGGaGGUGgc -5'
31771 3' -58 NC_006938.1 + 15643 0.67 0.56979
Target:  5'- ----cGUGUCAUCACCGCCUaugaagaugaacUCGCCGg -3'
miRNA:   3'- gcuucUACGGUGGUGGCGGA------------GGUGGC- -5'
31771 3' -58 NC_006938.1 + 42173 0.68 0.517938
Target:  5'- cCGAGGGgcuUGUCACCcggACCGgCUCgGCCa -3'
miRNA:   3'- -GCUUCU---ACGGUGG---UGGCgGAGgUGGc -5'
31771 3' -58 NC_006938.1 + 790 0.68 0.468067
Target:  5'- gCGGAGGucuccaguguUGCCAgCCggugugGCCGCCUCCGugcCCGa -3'
miRNA:   3'- -GCUUCU----------ACGGU-GG------UGGCGGAGGU---GGC- -5'
31771 3' -58 NC_006938.1 + 25950 0.66 0.633481
Target:  5'- uGAGGGcUGCCACCugUcgCUCCAgCGg -3'
miRNA:   3'- gCUUCU-ACGGUGGugGcgGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 56398 0.66 0.601526
Target:  5'- uGAGcucgGCCAuUCGCCGUCUCCAgCGg -3'
miRNA:   3'- gCUUcua-CGGU-GGUGGCGGAGGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.