Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31772 | 5' | -57.3 | NC_006938.1 | + | 41265 | 0.66 | 0.677943 |
Target: 5'- gCUCCagccagcgcucgugaGCGCUCCcgGCGaCGgcCUGGCAGg -3' miRNA: 3'- -GAGG---------------UGCGAGG--UGCaGCa-GACCGUCg -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 34067 | 0.66 | 0.673688 |
Target: 5'- cCUCCucACGacggCCuGCG-CGcCUGGCAGCa -3' miRNA: 3'- -GAGG--UGCga--GG-UGCaGCaGACCGUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 47298 | 0.66 | 0.663027 |
Target: 5'- -cCCAgCGCUCCggcACGUCGUgccaCUGGaUGGCc -3' miRNA: 3'- gaGGU-GCGAGG---UGCAGCA----GACC-GUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 41853 | 0.66 | 0.645916 |
Target: 5'- cCUCCcCGUgcuggUCCAgGUCGUCUaucucagagagccggGGCAGg -3' miRNA: 3'- -GAGGuGCG-----AGGUgCAGCAGA---------------CCGUCg -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 26896 | 0.66 | 0.641632 |
Target: 5'- uCUCCAgGCUCCGaagcCGcUCaUCacagGGCGGCa -3' miRNA: 3'- -GAGGUgCGAGGU----GC-AGcAGa---CCGUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 37863 | 0.66 | 0.630918 |
Target: 5'- -gCCGCGCUCCGuCGUUGagcUgUGGCAu- -3' miRNA: 3'- gaGGUGCGAGGU-GCAGC---AgACCGUcg -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 38130 | 0.67 | 0.619134 |
Target: 5'- gCUCCACGUgcaCCGgcUCGUCgccgauguagccgUGGCAGUa -3' miRNA: 3'- -GAGGUGCGa--GGUgcAGCAG-------------ACCGUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 6245 | 0.67 | 0.609501 |
Target: 5'- -cCCGCGCUUCACGaacuugaucuggUCGUCUGacuccaCGGCc -3' miRNA: 3'- gaGGUGCGAGGUGC------------AGCAGACc-----GUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 44518 | 0.67 | 0.609501 |
Target: 5'- gUCCGCcGCgaccauggCCGCcuUUGUCUGGuCAGCa -3' miRNA: 3'- gAGGUG-CGa-------GGUGc-AGCAGACC-GUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 57985 | 0.67 | 0.609501 |
Target: 5'- gCUCCcUGCUCCA-GUCG-CUGGacucCGGCu -3' miRNA: 3'- -GAGGuGCGAGGUgCAGCaGACC----GUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 7116 | 0.67 | 0.588158 |
Target: 5'- aCUCCAUGCugUCCGCGUCGa--GG-AGCc -3' miRNA: 3'- -GAGGUGCG--AGGUGCAGCagaCCgUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 6774 | 0.67 | 0.588158 |
Target: 5'- uUCCAUGa--CAUgGUCG-CUGGCGGCg -3' miRNA: 3'- gAGGUGCgagGUG-CAGCaGACCGUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 47805 | 0.67 | 0.566955 |
Target: 5'- -gCCAgGUa-CAUGUCGUCUGGC-GCg -3' miRNA: 3'- gaGGUgCGagGUGCAGCAGACCGuCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 2864 | 0.67 | 0.566955 |
Target: 5'- aUCauaACGCUCCGagGUCGcgaCUGGCGGg -3' miRNA: 3'- gAGg--UGCGAGGUg-CAGCa--GACCGUCg -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 48098 | 0.68 | 0.556424 |
Target: 5'- -gCC-CGCUCCugGUCGa--GGcCAGCg -3' miRNA: 3'- gaGGuGCGAGGugCAGCagaCC-GUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 25961 | 0.68 | 0.556424 |
Target: 5'- -aCCuguCGCUCCAgCGgggcCGUCUgGGUGGCg -3' miRNA: 3'- gaGGu--GCGAGGU-GCa---GCAGA-CCGUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 32689 | 0.68 | 0.535542 |
Target: 5'- cCUUCAgaaugUGCUCgGgGUCGUC-GGCGGCc -3' miRNA: 3'- -GAGGU-----GCGAGgUgCAGCAGaCCGUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 5459 | 0.69 | 0.484671 |
Target: 5'- cCUCCAgGCugguggucucgUCCguuuggaaggGCGUCGUCgUGGCAGg -3' miRNA: 3'- -GAGGUgCG-----------AGG----------UGCAGCAG-ACCGUCg -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 35363 | 0.69 | 0.483676 |
Target: 5'- -gCCGCGCUCU-CGUCGUCUgugggacGGgAGUg -3' miRNA: 3'- gaGGUGCGAGGuGCAGCAGA-------CCgUCG- -5' |
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31772 | 5' | -57.3 | NC_006938.1 | + | 49910 | 0.69 | 0.474769 |
Target: 5'- -gCCGCGCUCCAUGagcaUGUCaGcGCGGCc -3' miRNA: 3'- gaGGUGCGAGGUGCa---GCAGaC-CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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