miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 3' -59 NC_006938.1 + 9174 0.66 0.624428
Target:  5'- ---aGCUCuGGCCACCGcCGugGCGc- -3'
miRNA:   3'- ccacCGAG-CUGGUGGCaGCugCGCcu -5'
31781 3' -59 NC_006938.1 + 27279 0.66 0.624428
Target:  5'- cGGagGGUugagcaccuccUUGACCGCC-UCGACGUGGc -3'
miRNA:   3'- -CCa-CCG-----------AGCUGGUGGcAGCUGCGCCu -5'
31781 3' -59 NC_006938.1 + 15468 0.66 0.613983
Target:  5'- -cUGGcCUCGACCAggagCGggcUGACGCGGGc -3'
miRNA:   3'- ccACC-GAGCUGGUg---GCa--GCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 8606 0.66 0.610851
Target:  5'- aGGUGGCUcuacacggccaucaCGaggGCCGCCGaaagagUUGACGUGGu -3'
miRNA:   3'- -CCACCGA--------------GC---UGGUGGC------AGCUGCGCCu -5'
31781 3' -59 NC_006938.1 + 17765 0.66 0.603551
Target:  5'- ---cGCUCGACU-CCGUCGcCGgGGAc -3'
miRNA:   3'- ccacCGAGCUGGuGGCAGCuGCgCCU- -5'
31781 3' -59 NC_006938.1 + 21263 0.66 0.603551
Target:  5'- ---cGC-CGACCcgucGCUGuUCGACGCGGAg -3'
miRNA:   3'- ccacCGaGCUGG----UGGC-AGCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 32941 0.66 0.593142
Target:  5'- cGUGgaaGCUCGACCGCuCGuUCGAC-UGGGg -3'
miRNA:   3'- cCAC---CGAGCUGGUG-GC-AGCUGcGCCU- -5'
31781 3' -59 NC_006938.1 + 47071 0.66 0.588987
Target:  5'- uGUGGCgcacggugacgcgCGcCCACuCGUCGGCggucgGCGGAg -3'
miRNA:   3'- cCACCGa------------GCuGGUG-GCAGCUG-----CGCCU- -5'
31781 3' -59 NC_006938.1 + 51942 0.66 0.586911
Target:  5'- cGGUgGGCUCGGCgguGCCGcCcgaucugccgcgaagGACGUGGAg -3'
miRNA:   3'- -CCA-CCGAGCUGg--UGGCaG---------------CUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 52883 0.66 0.572421
Target:  5'- --gGGCUCGACC-UCuUCGAC-CGGAu -3'
miRNA:   3'- ccaCCGAGCUGGuGGcAGCUGcGCCU- -5'
31781 3' -59 NC_006938.1 + 8696 0.66 0.572421
Target:  5'- uGGUGGCuuUCGACCACCuGUCaa---GGAa -3'
miRNA:   3'- -CCACCG--AGCUGGUGG-CAGcugcgCCU- -5'
31781 3' -59 NC_006938.1 + 53441 0.67 0.566236
Target:  5'- cGGUGGCaaguUCGACUucGCCGagauccgcauuggcaUCGucaacuACGCGGAc -3'
miRNA:   3'- -CCACCG----AGCUGG--UGGC---------------AGC------UGCGCCU- -5'
31781 3' -59 NC_006938.1 + 28639 0.67 0.562123
Target:  5'- gGGU-GCUCGACCACgacaCGugGCuGGAg -3'
miRNA:   3'- -CCAcCGAGCUGGUGgca-GCugCG-CCU- -5'
31781 3' -59 NC_006938.1 + 40943 0.67 0.551875
Target:  5'- --cGGCUCGACCcgccCCG-CGAUG-GGAa -3'
miRNA:   3'- ccaCCGAGCUGGu---GGCaGCUGCgCCU- -5'
31781 3' -59 NC_006938.1 + 47957 0.67 0.551875
Target:  5'- uGGUcGGgUCGGCCGUgGUCGACuGCaGGAc -3'
miRNA:   3'- -CCA-CCgAGCUGGUGgCAGCUG-CG-CCU- -5'
31781 3' -59 NC_006938.1 + 42695 0.67 0.545754
Target:  5'- aGGUGGaggggUCGAcaCCACUGUCGAgaccgcgaauagcaGCGGAu -3'
miRNA:   3'- -CCACCg----AGCU--GGUGGCAGCUg-------------CGCCU- -5'
31781 3' -59 NC_006938.1 + 48485 0.67 0.541685
Target:  5'- --aGGCcgUGGCCGCC-UCGAuCGUGGAg -3'
miRNA:   3'- ccaCCGa-GCUGGUGGcAGCU-GCGCCU- -5'
31781 3' -59 NC_006938.1 + 47213 0.67 0.531558
Target:  5'- aGUGGUUCcaGAaCAaCGUCGugGCGGAc -3'
miRNA:   3'- cCACCGAG--CUgGUgGCAGCugCGCCU- -5'
31781 3' -59 NC_006938.1 + 20723 0.67 0.530549
Target:  5'- uGG-GGCUCGACCggaggcaggugucGCUGaUgGAgGCGGAc -3'
miRNA:   3'- -CCaCCGAGCUGG-------------UGGC-AgCUgCGCCU- -5'
31781 3' -59 NC_006938.1 + 34588 0.68 0.491798
Target:  5'- --cGGCUCGACCuGCCGaCGgACGCcGAc -3'
miRNA:   3'- ccaCCGAGCUGG-UGGCaGC-UGCGcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.