miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 3' -59 NC_006938.1 + 27279 0.66 0.624428
Target:  5'- cGGagGGUugagcaccuccUUGACCGCC-UCGACGUGGc -3'
miRNA:   3'- -CCa-CCG-----------AGCUGGUGGcAGCUGCGCCu -5'
31781 3' -59 NC_006938.1 + 7254 0.7 0.39055
Target:  5'- uGUGaGCUCGGCCauucGCCGUCuccaGCGGGa -3'
miRNA:   3'- cCAC-CGAGCUGG----UGGCAGcug-CGCCU- -5'
31781 3' -59 NC_006938.1 + 15829 0.68 0.453467
Target:  5'- -cUGGCgCGACC-CCG--GACGCGGAc -3'
miRNA:   3'- ccACCGaGCUGGuGGCagCUGCGCCU- -5'
31781 3' -59 NC_006938.1 + 54494 0.68 0.462901
Target:  5'- uGGUGGcCUCGACUccgGCCG-CGACagGUGGc -3'
miRNA:   3'- -CCACC-GAGCUGG---UGGCaGCUG--CGCCu -5'
31781 3' -59 NC_006938.1 + 35854 0.68 0.472436
Target:  5'- gGGUGGUcacgaUCGACUGCagcagGUCGGCGgcCGGAa -3'
miRNA:   3'- -CCACCG-----AGCUGGUGg----CAGCUGC--GCCU- -5'
31781 3' -59 NC_006938.1 + 51270 0.68 0.491798
Target:  5'- gGGuUGGCggCGAUggcaGCCGUCagcGCGCGGAa -3'
miRNA:   3'- -CC-ACCGa-GCUGg---UGGCAGc--UGCGCCU- -5'
31781 3' -59 NC_006938.1 + 2756 0.71 0.35243
Target:  5'- cGGUGGUUCcccggcuuccguucgGACCcUCGUCGcCGUGGAg -3'
miRNA:   3'- -CCACCGAG---------------CUGGuGGCAGCuGCGCCU- -5'
31781 3' -59 NC_006938.1 + 57920 0.69 0.413254
Target:  5'- cGGUGGCUUcuggggaaagcccaGGCCaccaccagacgugGCCGUCGACGagaacgugaCGGAg -3'
miRNA:   3'- -CCACCGAG--------------CUGG-------------UGGCAGCUGC---------GCCU- -5'
31781 3' -59 NC_006938.1 + 10771 0.68 0.466703
Target:  5'- cGGUGGCgaggauugccccUCGACCaccuuGCCGuccuccgucacauacUCGGCGgGGAc -3'
miRNA:   3'- -CCACCG------------AGCUGG-----UGGC---------------AGCUGCgCCU- -5'
31781 3' -59 NC_006938.1 + 48485 0.67 0.541685
Target:  5'- --aGGCcgUGGCCGCC-UCGAuCGUGGAg -3'
miRNA:   3'- ccaCCGa-GCUGGUGGcAGCU-GCGCCU- -5'
31781 3' -59 NC_006938.1 + 47071 0.66 0.588987
Target:  5'- uGUGGCgcacggugacgcgCGcCCACuCGUCGGCggucgGCGGAg -3'
miRNA:   3'- cCACCGa------------GCuGGUG-GCAGCUG-----CGCCU- -5'
31781 3' -59 NC_006938.1 + 60683 0.74 0.21067
Target:  5'- -uUGGCguuGCCACCGUCGAaGCGGAc -3'
miRNA:   3'- ccACCGagcUGGUGGCAGCUgCGCCU- -5'
31781 3' -59 NC_006938.1 + 47957 0.67 0.551875
Target:  5'- uGGUcGGgUCGGCCGUgGUCGACuGCaGGAc -3'
miRNA:   3'- -CCA-CCgAGCUGGUGgCAGCUG-CG-CCU- -5'
31781 3' -59 NC_006938.1 + 58182 0.68 0.453467
Target:  5'- uGGUGGuCUCGuCCGuuuggaagggcgUCGUCGugGCaGGGa -3'
miRNA:   3'- -CCACC-GAGCuGGU------------GGCAGCugCG-CCU- -5'
31781 3' -59 NC_006938.1 + 9099 0.7 0.365386
Target:  5'- uGGUGGCggCGGCCugC-UUGGCGCGc- -3'
miRNA:   3'- -CCACCGa-GCUGGugGcAGCUGCGCcu -5'
31781 3' -59 NC_006938.1 + 47213 0.67 0.531558
Target:  5'- aGUGGUUCcaGAaCAaCGUCGugGCGGAc -3'
miRNA:   3'- cCACCGAG--CUgGUgGCAGCugCGCCU- -5'
31781 3' -59 NC_006938.1 + 20723 0.67 0.530549
Target:  5'- uGG-GGCUCGACCggaggcaggugucGCUGaUgGAgGCGGAc -3'
miRNA:   3'- -CCaCCGAGCUGG-------------UGGC-AgCUgCGCCU- -5'
31781 3' -59 NC_006938.1 + 34588 0.68 0.491798
Target:  5'- --cGGCUCGACCuGCCGaCGgACGCcGAc -3'
miRNA:   3'- ccaCCGAGCUGG-UGGCaGC-UGCGcCU- -5'
31781 3' -59 NC_006938.1 + 16129 0.68 0.490821
Target:  5'- cGGcUGGgUCGACCGCUGcCacacccuccucaaGACGCGGc -3'
miRNA:   3'- -CC-ACCgAGCUGGUGGCaG-------------CUGCGCCu -5'
31781 3' -59 NC_006938.1 + 1548 0.7 0.39055
Target:  5'- uGGgacucGCUCGucacguacgccaACCACC-UCGGCGCGGAg -3'
miRNA:   3'- -CCac---CGAGC------------UGGUGGcAGCUGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.