miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 5' -52.9 NC_006938.1 + 39325 0.66 0.887793
Target:  5'- uUGcCGGCGa-GGCGGCGACGuAGGCGu -3'
miRNA:   3'- -ACaGUUGCacUUGCCGCUGCcUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 26330 0.66 0.887793
Target:  5'- cGcCcAUGUGGGCGGCGACacAGGCGu -3'
miRNA:   3'- aCaGuUGCACUUGCCGCUGccUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 49713 0.66 0.887793
Target:  5'- gGUCuucucgGUGAucuCGGCGAaccuUGGAGGCAu -3'
miRNA:   3'- aCAGuug---CACUu--GCCGCU----GCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 9369 0.66 0.887793
Target:  5'- gGUCG--GUG-AUGGCGAUGGAGGu- -3'
miRNA:   3'- aCAGUugCACuUGCCGCUGCCUCUgu -5'
31781 5' -52.9 NC_006938.1 + 6441 0.66 0.880319
Target:  5'- aGUCcggcuCGUGGACaGCGAC-GAGACc -3'
miRNA:   3'- aCAGuu---GCACUUGcCGCUGcCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 18347 0.66 0.880319
Target:  5'- gGUCAACGgucggauccacUGcuccuucaaccaGAUGGCGGCGGAcaagGACAa -3'
miRNA:   3'- aCAGUUGC-----------AC------------UUGCCGCUGCCU----CUGU- -5'
31781 5' -52.9 NC_006938.1 + 10152 0.66 0.880319
Target:  5'- gUGUCcGCGUGuuCGGCGuCGaGGGAa- -3'
miRNA:   3'- -ACAGuUGCACuuGCCGCuGC-CUCUgu -5'
31781 5' -52.9 NC_006938.1 + 26827 0.66 0.864611
Target:  5'- cGUCAagGCGgucaUGAACGGC-ACGaAGACAg -3'
miRNA:   3'- aCAGU--UGC----ACUUGCCGcUGCcUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 42541 0.66 0.864611
Target:  5'- cGUCAACGgcaagGGuucCGGcCGAgGGAGugGc -3'
miRNA:   3'- aCAGUUGCa----CUu--GCC-GCUgCCUCugU- -5'
31781 5' -52.9 NC_006938.1 + 38808 0.66 0.86217
Target:  5'- cGUCcuuCGUGGACGGUGugaccaacuucucuGCaGAGGCAu -3'
miRNA:   3'- aCAGuu-GCACUUGCCGC--------------UGcCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 15608 0.66 0.85639
Target:  5'- cGUUGAUccggaaGUGGAUGGCGAUguugcaGGGGACGu -3'
miRNA:   3'- aCAGUUG------CACUUGCCGCUG------CCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 63396 0.67 0.847934
Target:  5'- gGUgCAuACGUGGACGGCGAgGuccgcuGGGACu -3'
miRNA:   3'- aCA-GU-UGCACUUGCCGCUgC------CUCUGu -5'
31781 5' -52.9 NC_006938.1 + 38802 0.67 0.847934
Target:  5'- gGUC-GCGaUGAA-GGCGGCcuGGAGACGc -3'
miRNA:   3'- aCAGuUGC-ACUUgCCGCUG--CCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 61417 0.67 0.839252
Target:  5'- aUGUCGGCGUGGcacCGGCccucgacACGGAG-CAu -3'
miRNA:   3'- -ACAGUUGCACUu--GCCGc------UGCCUCuGU- -5'
31781 5' -52.9 NC_006938.1 + 23232 0.67 0.827641
Target:  5'- cGUCAugGgcggacccuucgagUGGuCGGCGACcGAGGCGg -3'
miRNA:   3'- aCAGUugC--------------ACUuGCCGCUGcCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 59510 0.67 0.821244
Target:  5'- aGUCGGcCGgguccGGCGGCGccacucgaaACGGAGGCAa -3'
miRNA:   3'- aCAGUU-GCac---UUGCCGC---------UGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 62724 0.67 0.821244
Target:  5'- -aUCuuCGUGGACGGCaacuUGGAGGCc -3'
miRNA:   3'- acAGuuGCACUUGCCGcu--GCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 8345 0.67 0.811936
Target:  5'- cUGcUCAACGgccagaucugGAucGCGGCGGCGGAcGCGc -3'
miRNA:   3'- -AC-AGUUGCa---------CU--UGCCGCUGCCUcUGU- -5'
31781 5' -52.9 NC_006938.1 + 27781 0.68 0.792766
Target:  5'- -cUCAACGgagaGAGCGGCGACcccGACAa -3'
miRNA:   3'- acAGUUGCa---CUUGCCGCUGccuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 49380 0.68 0.782924
Target:  5'- -aUCGACGauGACGGCGAgcCGGuGGCAu -3'
miRNA:   3'- acAGUUGCacUUGCCGCU--GCCuCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.